Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq19631 159 9e-34 seq4898 159 9e-34 >seq19631 Length=63550 Score = 159 bits (176), Expect = 9e-34 Identities = 404/602 (67%), Gaps = 23/602 (4%) Strand=Plus/Minus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATAT-TGGAAGGGAATTGTCGAAGAACTTCTGT 111372 ||| ||| ||||||| || ||| || | | |||| ||| | | || |||||| | | Sbjct 35175 TTTCCCAATTCTCACTACCAAG-GATGTTTTCTGGAGAGGAGTAGCTGAGGAACTTGTTT 35117 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTT-GCAGCAAAAAATGTAAAAATTTGG 111431 ||||| || || ||||||||| || |||||| || | ||||| | | ||||||| Sbjct 35116 GGTTTGTTAAGGGCGATACAAATGCCAA-GAACTTAGCCGACAAAAAGATCAGAATTTGG 35058 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-GACAACGAAGAAGG 111490 || || |||| ||| | | || || || || | || |||| || | ||||| | Sbjct 35057 GACGGTAATGCCTCAAGATAGTTCCTTGACTCTATCGG-CTTGAAAGATAGAGAAGAGTG 34999 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 |||||||| ||||| || || || ||||| | |||||||| || | || |||| || Sbjct 34998 GGATCTCGGGCCAGTCTATGGGTTCTAATGGAGACACTTTGGAGCTGCTTATGAAACAAT 34939 Query 111551 GCACGACTCATATGATT-CACAGGGAACTGATC-----AATTACAGAATGTCATTGATCA 111604 ||||||| |||| |||||| || ||| |||| | |||||| |||| Sbjct 34938 GCACGAC------GATTACACAGGAAAAGGATTTGACTAATTGGCTGACGTCATTAATCA 34885 Query 111605 AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 | |||||||| ||||| | | ||| | |||||||| |||||| | || | Sbjct 34884 GTTGAAGAACAATCCAACAAGCAGAAGAATTGTGATGAGTGCTTGGAACGCTGCTGATCT 34825 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACG---ACGG 111721 |||| ||||| ||||| || || || || | | |||||||| | | || Sbjct 34824 TAAAAACATGGCTCTTCCTCCCTGCCACATTTTAGCTTAATTTTATGTTTCTGCTGATGG 34765 Query 111722 GATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAA 111781 | |||||| |||||||||||||| ||||| |||||| ||||||||| |||| || || Sbjct 34764 AAAGCTTTCCTGCCAAATGTATCAAAGATCTTGTGATATGGGTCTTGGTATTCCTTTCAA 34705 Query 111782 TATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTC-ATTTTACAAATCTCAAACCGG 111840 ||||| ||||| || | | || ||| | | || | | | | | || | || | Sbjct 34704 CATTGCGAGTTATTCATTGTTAACCTGCATGCTTGCACAAGTGTGCGGAT-TGAAGAGAG 34646 Query 111841 GTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTA 111900 | || |||||||| || | || ||||| ||||| || | ||| || |||| ||||| Sbjct 34645 GAGAGTTCATTCATGTATTAGGTGATGCTCATGTATATAAAAATCATGTTGAACCACTTC 34586 Query 111901 AA 111902 || Sbjct 34585 AA 34584 >seq4898 Length=10221 Score = 159 bits (176), Expect = 9e-34 Identities = 404/602 (67%), Gaps = 23/602 (4%) Strand=Plus/Minus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATAT-TGGAAGGGAATTGTCGAAGAACTTCTGT 111372 ||| ||| ||||||| || ||| || | | |||| ||| | | || |||||| | | Sbjct 4415 TTTCCCAATTCTCACTACCAAG-GATGTTTTCTGGAGAGGAGTAGCTGAGGAACTTGTTT 4357 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTT-GCAGCAAAAAATGTAAAAATTTGG 111431 ||||| || || ||||||||| || |||||| || | ||||| | | ||||||| Sbjct 4356 GGTTTGTTAAGGGCGATACAAATGCCAA-GAACTTAGCCGACAAAAAGATCAGAATTTGG 4298 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-GACAACGAAGAAGG 111490 || || |||| ||| | | || || || || | || |||| || | ||||| | Sbjct 4297 GACGGTAATGCCTCAAGATAGTTCCTTGACTCTATCGG-CTTGAAAGATAGAGAAGAGTG 4239 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 |||||||| ||||| || || || ||||| | |||||||| || | || |||| || Sbjct 4238 GGATCTCGGGCCAGTCTATGGGTTCTAATGGAGACACTTTGGAGCTGCTTATGAAACAAT 4179 Query 111551 GCACGACTCATATGATT-CACAGGGAACTGATC-----AATTACAGAATGTCATTGATCA 111604 ||||||| |||| |||||| || ||| |||| | |||||| |||| Sbjct 4178 GCACGAC------GATTACACAGGAAAAGGATTTGACTAATTGGCTGACGTCATTAATCA 4125 Query 111605 AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 | |||||||| ||||| | | ||| | |||||||| |||||| | || | Sbjct 4124 GTTGAAGAACAATCCAACAAGCAGAAGAATTGTGATGAGTGCTTGGAACGCTGCTGATCT 4065 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACG---ACGG 111721 |||| ||||| ||||| || || || || | | |||||||| | | || Sbjct 4064 TAAAAACATGGCTCTTCCTCCCTGCCACATTTTAGCTTAATTTTATGTTTCTGCTGATGG 4005 Query 111722 GATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAA 111781 | |||||| |||||||||||||| ||||| |||||| ||||||||| |||| || || Sbjct 4004 AAAGCTTTCCTGCCAAATGTATCAAAGATCTTGTGATATGGGTCTTGGTATTCCTTTCAA 3945 Query 111782 TATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTC-ATTTTACAAATCTCAAACCGG 111840 ||||| ||||| || | | || ||| | | || | | | | | || | || | Sbjct 3944 CATTGCGAGTTATTCATTGTTAACCTGCATGCTTGCACAAGTGTGCGGAT-TGAAGAGAG 3886 Query 111841 GTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTA 111900 | || |||||||| || | || ||||| ||||| || | ||| || |||| ||||| Sbjct 3885 GAGAGTTCATTCATGTATTAGGTGATGCTCATGTATATAAAAATCATGTTGAACCACTTC 3826 Query 111901 AA 111902 || Sbjct 3825 AA 3824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302924096113040