Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq18779 122 7e-23 seq2143 114 1e-20 seq17194 96.9 3e-15 seq20086 82.4 7e-11 seq10467 82.4 7e-11 seq6376 82.4 7e-11 seq5238 82.4 7e-11 seq1293 82.4 7e-11 >seq18779 Length=42783 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| | || |||||| | Sbjct 12912 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 12971 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | ||||| |||||| ||||| ||||| || || ||||||||| Sbjct 12972 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 13031 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| | || |||||||| ||||||| |||| | | || || || ||| Sbjct 13032 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 13091 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || || || |||| || || | ||||||||||| || Sbjct 13092 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 13138 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 23984 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||| ||| |||||| | || || || || | || || || | || || | || || | Sbjct 12448 AAATAAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTG 12507 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 || || ||||||||||| | ||||| ||||| ||||| ||||| || || | Sbjct 12508 AGCCCTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAC 12567 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 |||||||||| ||||| || | || ||||||||||||||||| | |||| | | || | Sbjct 12568 CCGATCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTG 12627 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || ||||| || || ||||| || |||| || || | ||| | |||||||| Sbjct 12628 ACTACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 12682 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | |||||||| | || || | || || ||| ||| | Sbjct 12684 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAG-CCATC 12742 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| ||||| || || ||||| || || |||||||| Sbjct 12743 AGACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 12802 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| |||| | || |||||||| ||||||| |||| | | || || || || Sbjct 12803 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 12862 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| || || || |||| || || | ||||||||||| || Sbjct 12863 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 12910 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| |||| || ||| ||| | Sbjct 13140 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAG-CCATC 13198 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | || || ||||| ||||| ||||| || || |||||||| Sbjct 13199 AGACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCA 13258 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | || || |||||||| ||||| | ||||| | | ||| || || Sbjct 13259 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAA 13318 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| || || || | || || || | ||| | ||||| || Sbjct 13319 CATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 13366 >seq2143 Length=26640 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 23984 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||| ||| |||||| | || || || || | || || || | || || | || || | Sbjct 6733 AAATAAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTG 6674 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 || || ||||||||||| | ||||| ||||| ||||| ||||| || || | Sbjct 6673 AGCCCTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAC 6614 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 |||||||||| ||||| || | || ||||||||||||||||| | |||| | | || | Sbjct 6613 CCGATCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTG 6554 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | || ||||| || || ||||| || |||| || || | ||| | |||||||| Sbjct 6553 ACTACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 6499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| |||| || ||| ||| | Sbjct 6010 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACC-TCGATGTTGAG-CCATC 5953 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | || || ||||| ||||| ||||| || || |||||||| Sbjct 5952 AGACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCA 5893 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | || || |||||||| ||||| | ||||| | | ||| || || Sbjct 5892 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAA 5833 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| || || || | || || || | ||| | ||||| || Sbjct 5832 CATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 5785 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || ||||| || || ||||||||||| ||||| |||| | || |||||||| ||| Sbjct 6145 GATAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTTTGCTGGAAAGCAACTTGAA 6086 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | | || || || ||||| ||||| || || || |||| || || | Sbjct 6085 GATGGAAGAACCCTTAGTGACTACAACATCCAAAAGGAGTCAACCCTTCACTTGGTCCTC 6026 Query 24204 AGATTGAGAGGAGG 24217 ||||||||||| || Sbjct 6025 AGATTGAGAGGTGG 6012 >seq17194 Length=120762 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24057 ATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGA 24116 |||||| | |||||| ||||| ||||| ||||| || || ||||||||||| ||| Sbjct 43985 ATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGA 43926 Query 24117 CTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAA 24176 || || | || ||| || ||||| ||||| | ||||| | ||||| || ||||| ||| Sbjct 43925 CTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAA 43866 Query 24177 AAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| | || || || | ||| | ||||| || Sbjct 43865 AAGGAGTCTACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 43825 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| || || || ||||||||||||||||| |||| || || || || | ||| Sbjct 44695 GACAAAGAGGGAATCCCACCCGATCAACAGAGACTCATTTTCGCTGGAAAACAGTTGGAA 44636 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 || | ||||| | || ||| || ||||| || || || || || |||| || || || Sbjct 44635 GACGGCAGAACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTG 44576 Query 24204 AGATTGAGAGGAGG 24217 ||| | |||||||| Sbjct 44575 AGACTCAGAGGAGG 44562 >seq20086 Length=32257 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || | ||||| | || || ||| | Sbjct 21969 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 22028 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | || || |||||| ||||||||||| || || || ||| Sbjct 22029 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 22088 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | | || ||| | | ||||| | ||||| | | ||||| Sbjct 22089 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 22148 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| ||||||||||| || Sbjct 22149 AACATCCAAAAAGAATCAAC 22168 >seq10467 Length=17661 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || | ||||| | || || ||| | Sbjct 3608 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 3667 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | || || |||||| ||||||||||| || || || ||| Sbjct 3668 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 3727 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | | || ||| | | ||||| | ||||| | | ||||| Sbjct 3728 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 3787 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| ||||||||||| || Sbjct 3788 AACATCCAAAAAGAATCAAC 3807 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || | ||||| | || || ||| | Sbjct 14046 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 13987 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | || || |||||| ||||||||||| || || || ||| Sbjct 13986 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 13927 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | | || ||| | | ||||| | ||||| | | ||||| Sbjct 13926 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 13867 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| ||||||||||| || Sbjct 13866 AACATCCAAAAAGAATCAAC 13847 >seq6376 Length=13110 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || | ||||| | || || ||| | Sbjct 12006 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 12065 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | || || |||||| ||||||||||| || || || ||| Sbjct 12066 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 12125 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | | || ||| | | ||||| | ||||| | | ||||| Sbjct 12126 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 12185 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| ||||||||||| || Sbjct 12186 AACATCCAAAAAGAATCAAC 12205 >seq5238 Length=45295 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || | ||||| | || || ||| | Sbjct 21817 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 21876 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | || || |||||| ||||||||||| || || || ||| Sbjct 21877 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 21936 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | | || ||| | | ||||| | ||||| | | ||||| Sbjct 21937 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 21996 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| ||||||||||| || Sbjct 21997 AACATCCAAAAAGAATCAAC 22016 >seq1293 Length=7053 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || | ||||| | || || ||| | Sbjct 6295 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 6354 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | || || |||||| ||||||||||| || || || ||| Sbjct 6355 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 6414 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | | || ||| | | ||||| | ||||| | | ||||| Sbjct 6415 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 6474 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| ||||||||||| || Sbjct 6475 AACATCCAAAAAGAATCAAC 6494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429801231186600