Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq18779 89.7 5e-13 seq2143 86.0 6e-12 >seq18779 Length=42783 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| | || || || || | ||| ||||||||||| |||||||| || || Sbjct 13138 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 13079 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || || ||||| || || | || | | || || || || ||| Sbjct 13078 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 13019 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | ||||| | | ||||| | Sbjct 13018 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACG 12959 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| || ||||| Sbjct 12958 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| || ||||| || |||||||| || || | ||| | ||| Sbjct 12667 AGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCT 12608 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || |||||||| ||| |||| | | || || || || ||||||||||| ||||| Sbjct 12607 TCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCT 12548 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | || || | || ||| | ||| | || | ||| Sbjct 12547 TGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTC 12488 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTT 131244 || || || || || || ||||| || |||||| ||||||| Sbjct 12487 TTGCCTGTGAGGGTCTTAACGAAGATTTGCATG-TTTATTTT 12447 >seq2143 Length=26640 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | ||| || ||||| || |||||||| || || | ||| | ||| Sbjct 6514 AGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCT 6573 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || |||||||| ||| |||| | | || || || || ||||||||||| ||||| Sbjct 6574 TCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCT 6633 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | || | || || | || ||| | ||| | || | ||| Sbjct 6634 TGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTC 6693 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTT 131244 || || || || || || ||||| || |||||| ||||||| Sbjct 6694 TTGCCTGTGAGGGTCTTAACGAAGATTTGCATG-TTTATTTT 6734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471861047884800