Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq18779 98.7 7e-16 seq20086 96.9 2e-15 seq10467 96.9 2e-15 seq6376 96.9 2e-15 seq5238 96.9 2e-15 seq1293 96.9 2e-15 >seq18779 Length=42783 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | ||||| ||||| || ||||||||| || ||||| ||| Sbjct 13140 TACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAC 13081 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || || | ||| ||||| ||||| || || | ||||||||||| | Sbjct 13080 TAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTG 13021 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| || ||| ||| ||||||| | |||||| | || | Sbjct 13020 GGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGA 12961 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || || | ||| || ||||| || ||||| Sbjct 12960 CGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 >seq20086 Length=32257 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || ||||| || ||||| || |||||||||||||| | |||| || Sbjct 22180 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 22121 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || | ||||| ||||| || || | |||||||| | ||| | ||||||||||| | Sbjct 22120 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 22061 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | || ||||| | || || || | |||||||| ||| Sbjct 22060 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 22001 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| || || ||||| |||| ||| ||| Sbjct 22000 CCGGTCAAAGTCTTGACGAAGATCTACATTTTT 21968 >seq10467 Length=17661 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 || ||||| || ||||| || ||||| || |||||||||||||| | |||| Sbjct 3822 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 3763 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || || | ||||| ||||| || || | |||||||| | ||| | ||||||||||| Sbjct 3762 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 3703 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || ||| || || | || ||||| | || || || | |||||||| Sbjct 3702 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 3643 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| ||||| || || ||||| |||| ||| ||| Sbjct 3642 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 3607 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 || ||||| || ||||| || ||||| || |||||||||||||| | |||| Sbjct 13832 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 13891 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || || | ||||| ||||| || || | |||||||| | ||| | ||||||||||| Sbjct 13892 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 13951 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || ||| || || | || ||||| | || || || | |||||||| Sbjct 13952 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 14011 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| ||||| || || ||||| |||| ||| ||| Sbjct 14012 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 14047 >seq6376 Length=13110 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 || ||||| || ||||| || ||||| || |||||||||||||| | |||| Sbjct 12220 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 12161 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || || | ||||| ||||| || || | |||||||| | ||| | ||||||||||| Sbjct 12160 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 12101 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || ||| || || | || ||||| | || || || | |||||||| Sbjct 12100 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 12041 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| ||||| || || ||||| |||| ||| ||| Sbjct 12040 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 12005 >seq5238 Length=45295 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 || ||||| || ||||| || ||||| || |||||||||||||| | |||| Sbjct 22031 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 21972 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || || | ||||| ||||| || || | |||||||| | ||| | ||||||||||| Sbjct 21971 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 21912 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || ||| || || | || ||||| | || || || | |||||||| Sbjct 21911 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 21852 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| ||||| || || ||||| |||| ||| ||| Sbjct 21851 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 21816 >seq1293 Length=7053 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 || ||||| || ||||| || ||||| || |||||||||||||| | |||| Sbjct 6509 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 6450 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || || | ||||| ||||| || || | |||||||| | ||| | ||||||||||| Sbjct 6449 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 6390 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || ||| || || | || ||||| | || || || | |||||||| Sbjct 6389 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 6330 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| ||||| || || ||||| |||| ||| ||| Sbjct 6329 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 6294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334842206613320