Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1748 196 6e-45 seq17288 145 1e-29 >seq1748 Length=94692 Score = 196 bits (216), Expect = 6e-45 Identities = 734/1124 (65%), Gaps = 44/1124 (4%) Strand=Plus/Minus Query 62567 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 62625 || ||||| ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 40459 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 40401 Query 62626 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62685 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 40400 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 40341 Query 62686 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACAT 62739 ||| ||| | | | || | ||||| || | | || || || | Sbjct 40340 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 40281 Query 62740 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62799 || || |||| ||| || |||||||| || || || |||| | | | | ||| | Sbjct 40280 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 40221 Query 62800 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 62859 |||||||||||||| ||| || ||| || || || | ||||| | || ||| | Sbjct 40220 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 40161 Query 62860 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 || || ||||| || ||||| || | ||||||||||| || | ||||| ||||| || Sbjct 40160 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 40101 Query 62920 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTC--TTTCGTA 62976 ||||| || |||||| | || ||| | |||| |||| || Sbjct 40100 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTCTTGCGACCTCTACCAGTGGTTTCATA 40044 Query 62977 -TAG-TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCA 63034 | | |||| | || || ||||| || ||||| | | ||||| || |||||| Sbjct 40043 CTCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCA 39986 Query 63035 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGG 63093 | |||||||| | | ||| ||| | | | ||||| ||| | |||| || ||||| || Sbjct 39985 TTTGGACACATGAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGG 39927 Query 63094 AATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63152 | |||||||||| || ||| || ||||| | ||||| || || || || ||||||| Sbjct 39926 AGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 39868 Query 63153 TAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63211 | || | ||||| | | || ||||||| ||||| ||||| | || | || | | || Sbjct 39867 TGAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCT 39809 Query 63212 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63271 || | ||| || || | ||| | |||||| ||||||| ||| |||| | ||| Sbjct 39808 CCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAAC 39749 Query 63272 ATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGA 63331 |||||||| | ||||| || || || || ||| ||| ||| || || | Sbjct 39748 ATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTT 39689 Query 63332 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63391 | || | ||| | || || || || || || ||||| | || | |||| Sbjct 39688 ACATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTT 39629 Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTAG 63449 || || ||| | || || || || || || | ||| || ||| || ||| || Sbjct 39628 AAAGTTTCAAAAATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAG 39574 Query 63450 A---CATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 | ||| | ||| | ||||| | ||||| | || |||| || |||||||| Sbjct 39573 AACTCATCTAAGGTTTTG--GTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAA 39516 Query 63505 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 ||| || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 39515 CCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAAT 39456 Query 63565 TCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63622 || |||| || | ||| | ||||||||| ||||| |||| ||| | |||| || Sbjct 39455 ACCAATACT--TACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTG-CCATC 39399 Query 63623 TTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63665 || || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 39398 TTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 39355 >seq17288 Length=143976 Score = 145 bits (160), Expect = 1e-29 Identities = 386/582 (66%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| | ||| |||||||| ||| | || || || || ||||| || ||||| ||||| Sbjct 116967 GTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCC 116908 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 32793 |||||| |||||||| || || || ||| || ||||| || ||||| || || || | | Sbjct 116907 ACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAG 116849 Query 32794 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 32853 | || || ||||| |||||||| | | | ||||| ||| |||||||| |||| Sbjct 116848 CAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCC 116789 Query 32854 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 32913 | || |||||||| ||||| || || | || || || ||||| | | || | Sbjct 116788 ATTCAGCCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 116729 Query 32914 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 32973 | | || | | || || || | | || | || || |||||||| | Sbjct 116728 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 116669 Query 32974 CAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAA 33033 | || |||||| || || ||||| || | || || | || || | ||| ||||| | Sbjct 116668 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 116609 Query 33034 ATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 33093 ||| | || | || || || || |||||||| ||| || ||||| || | || | Sbjct 116608 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGT 116549 Query 33094 GTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGAT 33152 | || ||||| | | | |||| || ||| ||| | | |||||| || | || | | Sbjct 116548 GCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCG 116490 Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGAT 33211 | || | ||| || ||||| || | ||| |||| | || ||||| |||||||| Sbjct 116489 AGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGAT 116431 Query 33212 GTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 ||| | || | ||||||| ||||||||||| ||||| || Sbjct 116430 GTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 116389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633428287312000