Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq20086 102 7e-17 seq10467 102 7e-17 seq6376 102 7e-17 seq5238 102 7e-17 seq1293 102 7e-17 seq3525 82.4 7e-11 >seq20086 Length=32257 Score = 102 bits (112), Expect = 7e-17 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||||||||| | || || | || || ||| Sbjct 21967 GAAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGC 22026 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||||| | ||| | || | ||| ||||||||||| ||||| ||| Sbjct 22027 CTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAA-GACAAAGAAGGTATTCCCCCT 22085 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||||| | | || ||||| || || | || ||||| | | || || ||| Sbjct 22086 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 22145 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAA 25212 ||||| || ||||||||||| || || || || || |||| Sbjct 22146 TACAACATCCAAAAAGAATCAACTCTCCACTTGGT-CTAA 22184 >seq10467 Length=17661 Score = 102 bits (112), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||||||||| | || || | || || ||| Sbjct 3606 GAAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGC 3665 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||||| | ||| | || | ||| ||||||||||| ||||| ||| Sbjct 3666 CTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAA-GACAAAGAAGGTATTCCCCCT 3724 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||||| | | || ||||| || || | || ||||| | | || || ||| Sbjct 3725 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 3784 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||||||||||| || || || || || Sbjct 3785 TACAACATCCAAAAAGAATCAACTCTCCACTTGGT 3819 Score = 102 bits (112), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||||||||| | || || | || || ||| Sbjct 14048 GAAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGC 13989 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||||| | ||| | || | ||| ||||||||||| ||||| ||| Sbjct 13988 CTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAA-GACAAAGAAGGTATTCCCCCT 13930 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||||| | | || ||||| || || | || ||||| | | || || ||| Sbjct 13929 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 13870 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||||||||||| || || || || || Sbjct 13869 TACAACATCCAAAAAGAATCAACTCTCCACTTGGT 13835 >seq6376 Length=13110 Score = 102 bits (112), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||||||||| | || || | || || ||| Sbjct 12004 GAAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGC 12063 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||||| | ||| | || | ||| ||||||||||| ||||| ||| Sbjct 12064 CTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAA-GACAAAGAAGGTATTCCCCCT 12122 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||||| | | || ||||| || || | || ||||| | | || || ||| Sbjct 12123 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 12182 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||||||||||| || || || || || Sbjct 12183 TACAACATCCAAAAAGAATCAACTCTCCACTTGGT 12217 >seq5238 Length=45295 Score = 102 bits (112), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||||||||| | || || | || || ||| Sbjct 21815 GAAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGC 21874 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||||| | ||| | || | ||| ||||||||||| ||||| ||| Sbjct 21875 CTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAA-GACAAAGAAGGTATTCCCCCT 21933 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||||| | | || ||||| || || | || ||||| | | || || ||| Sbjct 21934 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 21993 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||||||||||| || || || || || Sbjct 21994 TACAACATCCAAAAAGAATCAACTCTCCACTTGGT 22028 >seq1293 Length=7053 Score = 102 bits (112), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||||||||| | || || | || || ||| Sbjct 6293 GAAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGC 6352 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||||| | ||| | || | ||| ||||||||||| ||||| ||| Sbjct 6353 CTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAA-GACAAAGAAGGTATTCCCCCT 6411 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||||| | | || ||||| || || | || ||||| | | || || ||| Sbjct 6412 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 6471 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||| || ||||||||||| || || || || || Sbjct 6472 TACAACATCCAAAAAGAATCAACTCTCCACTTGGT 6506 >seq3525 Length=54936 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || ||||| || ||||| ||||||||||| | | || ||||| || | ||||||| Sbjct 24040 GATAAAGAGGGCATTCCTCCTGACCAACAAAGATTAATATTTGCAGGTATGTAATTAGAG 24099 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | | || |||| || ||||||||| ||| ||| || || || |||||||| || Sbjct 24100 GACGGAAGGACATTGGGAGACTACAATATTTAAACAGAGTCAACACTCCATTTAGTTCTT 24159 Query 25212 AGGCTAAGAGGAGGA 25226 || || ||||| ||| Sbjct 24160 AGACTCAGAGGTGGA 24174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433192167921800