Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq20086 111 1e-19 seq10467 111 1e-19 seq6376 111 1e-19 seq5238 111 1e-19 seq1293 111 1e-19 seq18779 96.9 3e-15 seq17194 93.3 4e-14 seq2143 91.5 1e-13 >seq20086 Length=32257 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | || || || || ||||| |||||||| || | |||||||| || || | Sbjct 21968 AAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCC 22027 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||||| | || | | || || ||||||||||| || |||||||| || || Sbjct 22028 TTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGA 22087 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| | || || ||||| || || |||| || || | | ||| | || ||||| Sbjct 22088 TCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTA 22147 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| ||||||||||| || Sbjct 22148 CAACATCCAAAAAGAATCAAC 22168 >seq10467 Length=17661 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | || || || || ||||| |||||||| || | |||||||| || || | Sbjct 3607 AAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCC 3666 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||||| | || | | || || ||||||||||| || |||||||| || || Sbjct 3667 TTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGA 3726 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| | || || ||||| || || |||| || || | | ||| | || ||||| Sbjct 3727 TCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTA 3786 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| ||||||||||| || Sbjct 3787 CAACATCCAAAAAGAATCAAC 3807 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | || || || || ||||| |||||||| || | |||||||| || || | Sbjct 14047 AAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCC 13988 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||||| | || | | || || ||||||||||| || |||||||| || || Sbjct 13987 TTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGA 13928 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| | || || ||||| || || |||| || || | | ||| | || ||||| Sbjct 13927 TCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTA 13868 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| ||||||||||| || Sbjct 13867 CAACATCCAAAAAGAATCAAC 13847 >seq6376 Length=13110 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | || || || || ||||| |||||||| || | |||||||| || || | Sbjct 12005 AAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCC 12064 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||||| | || | | || || ||||||||||| || |||||||| || || Sbjct 12065 TTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGA 12124 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| | || || ||||| || || |||| || || | | ||| | || ||||| Sbjct 12125 TCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTA 12184 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| ||||||||||| || Sbjct 12185 CAACATCCAAAAAGAATCAAC 12205 >seq5238 Length=45295 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | || || || || ||||| |||||||| || | |||||||| || || | Sbjct 21816 AAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCC 21875 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||||| | || | | || || ||||||||||| || |||||||| || || Sbjct 21876 TTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGA 21935 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| | || || ||||| || || |||| || || | | ||| | || ||||| Sbjct 21936 TCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTA 21995 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| ||||||||||| || Sbjct 21996 CAACATCCAAAAAGAATCAAC 22016 >seq1293 Length=7053 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | || || || || ||||| |||||||| || | |||||||| || || | Sbjct 6294 AAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCC 6353 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||||| | || | | || || ||||||||||| || |||||||| || || Sbjct 6354 TTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGA 6413 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| | || || ||||| || || |||| || || | | ||| | || ||||| Sbjct 6414 TCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTA 6473 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| ||||||||||| || Sbjct 6474 CAACATCCAAAAAGAATCAAC 6494 >seq18779 Length=42783 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | || || || | | Sbjct 12912 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 12971 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| ||| || ||||||||||| ||||| |||||||||||| Sbjct 12972 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 13031 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || || || | || ||| | ||| | || |||||| Sbjct 13032 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 13091 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | || || || | ||||| | || ||| Sbjct 13092 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGT 13139 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| |||||||| || ||||| || | || || || || ||||| | || || || Sbjct 12451 TAAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGC 12510 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || | || ||| | || || |||| || || ||||||||||| || || ||||||| Sbjct 12511 CCTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCG 12570 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||||||| | || || || || ||||| || | || || | ||| | || | Sbjct 12571 ATCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACT 12630 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || || ||||| ||| | || || ||| | || | | |||||| Sbjct 12631 ACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGGT 12683 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||||||||| || || | | Sbjct 12684 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 12743 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || ||||| ||||| |||||||| ||||||||| Sbjct 12744 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 12803 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || || || | || ||| | ||| | || |||||| Sbjct 12804 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 12863 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | || || || | ||||| | || ||| Sbjct 12864 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGT 12911 >seq17194 Length=120762 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||| ||||| || |||||||||||||| | || || || || || ||| Sbjct 44704 AAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGAGACTCATTTTCGCTGGAAAA 44645 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || || | | ||| ||||||| |||||||| || || || || ||| | || Sbjct 44644 CAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTTCAC 44585 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||| || | | |||||| Sbjct 44584 TTGGTCTTGAGACTCAGAGGAGGT 44561 >seq2143 Length=26640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| |||||||| || ||||| || | || || || || ||||| | || || || Sbjct 6730 TAAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGC 6671 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || | || ||| | || || |||| || || ||||||||||| || || ||||||| Sbjct 6670 CCTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCG 6611 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||||||| | || || || || ||||| || | || || | ||| | || | Sbjct 6610 ATCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACT 6551 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || || ||||| ||| | || || ||| | || | | |||||| Sbjct 6550 ACAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGGT 6498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419596431011800