Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19424 89.7 1e-12 seq17552 89.7 1e-12 seq2793 89.7 1e-12 seq1529 89.7 1e-12 >seq19424 Length=10835 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 |||| |||||| ||||||||||||||||||||| | ||||||| | |||||||| |||| Sbjct 8996 GAGAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGT 9055 Query 142558 TCGAGCCCC 142566 ||||||||| Sbjct 9056 TCGAGCCCC 9064 >seq17552 Length=67054 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 |||| |||||| ||||||||||||||||||||| | ||||||| | |||||||| |||| Sbjct 9127 GAGAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGT 9186 Query 142558 TCGAGCCCC 142566 ||||||||| Sbjct 9187 TCGAGCCCC 9195 >seq2793 Length=42345 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 |||| |||||| ||||||||||||||||||||| | ||||||| | |||||||| |||| Sbjct 20466 GAGAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGT 20407 Query 142558 TCGAGCCCC 142566 ||||||||| Sbjct 20406 TCGAGCCCC 20398 >seq1529 Length=86288 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 |||| |||||| ||||||||||||||||||||| | ||||||| | |||||||| |||| Sbjct 84773 GAGAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGT 84832 Query 142558 TCGAGCCCC 142566 ||||||||| Sbjct 84833 TCGAGCCCC 84841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027498089230520