Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq17288 132 9e-26 >seq17288 Length=143976 Score = 132 bits (146), Expect = 9e-26 Identities = 387/586 (66%), Gaps = 25/586 (4%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTT--CTCCAA-CTGGACC 42341 ||| || || | ||||||||| ||||||||| | ||| | || | ||||||| Sbjct 116416 ATCAAGTACAACGACATCTGGAAGATGTACAAGGAC---CAGATGGCTGCTTTCTGGACC 116472 Query 42342 GCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 | ||||| || ||||| |||| ||| | |||||| ||| || ||||| Sbjct 116473 TCTGAGGAAATCGACCTCGCCACCGACGTTAAGGATTGGGAGAGACTCAACGACAACGAG 116532 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 | || |||| || | || ||||| ||||| ||||| ||||| || ||||| ||| Sbjct 116533 AGACACTTTATCAAGCACGTCCTTGCCTTTTTCGCTGCCTCAGACGGAATCGTCAACGAG 116592 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGG 42520 ||||| ||| || ||| | || | || || | || || ||||| ||||| || Sbjct 116593 AACCTCGCCCAGAGATTCTGTACTGAAATCCAAGTTCCA-GAAGCACGCTGTTTCTATGG 116651 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 |||||| || || |||||| | ||||| ||| ||| | ||| || |||| Sbjct 116652 CTTCCAAATGATGATGGAGAACATTCACTCAGAGACTTACTCAGTACTCATCGACACCCT 116711 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGG---CTGTTCAAGGCCATGGAGACGATGCCCTG 42637 |||| || || |||| || | | || ||||| ||||| | || || Sbjct 116712 CATCAGTGACCCACACGAG---AAGGAGTTCCTCTTCAAAGCCATCACTAACATCCCAGT 116768 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCG---AGAGTCCCGACGCAACGTT 42694 | | |||||||| || ||||| | || ||||| | |||| ||| | || Sbjct 116769 TGTAACTAAGAAGGCTGAATGGGCCATTAAGTGGATTGGTGAGAG------CGCTAGCTT 116822 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || ||||| || | || || | || ||||||||||||||||||| || ||||| Sbjct 116823 CGCTGAGAGACTAATTGCTTTCGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTG 116882 Query 42755 CTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 ||| ||||||||||| ||| || || || ||||| || ||||||||||| || || | Sbjct 116883 CTCAATCTTCTGGCTTAAGAAGCGTGGCCTC-ATGCCAGGTCTCACCTTCTCAAATGAGC 116941 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 |||| || ||||| || |||| | |||||||| ||||| || Sbjct 116942 TCATTTCAAGAGACGAAGGTATGCACACTGACTTTGCTTGCCTTCT 116987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944035594947200