Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18779 120 7e-22 seq20086 116 9e-21 seq10467 116 9e-21 seq6376 116 9e-21 seq5238 116 9e-21 seq2143 116 9e-21 seq1293 116 9e-21 seq17194 84.2 5e-11 >seq18779 Length=42783 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| | || | |||||||| | ||| || || |||||| Sbjct 13330 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAG 13271 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||| ||||| || |||| ||| || || ||||||||| Sbjct 13270 ATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTT 13211 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || ||||| ||||| ||||| ||||| || ||||||||| Sbjct 13210 TCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACG 13151 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 13150 AAGATTTGCAT 13140 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | |||||| || || | |||| || ||| || ||||| || ||||| Sbjct 12682 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 12623 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||||||| | ||| || || |||||||| || | |||||| |||| Sbjct 12622 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 12563 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || || || || ||||| || | || | || || Sbjct 12562 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 12503 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 12502 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 12456 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| || || | ||| ||||| | ||| ||||| || || Sbjct 13102 TCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAA 13043 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||| ||||| || || ||||| || || || || || Sbjct 13042 ATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 12983 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | ||||| ||||| ||||| || ||||||||| Sbjct 12982 TCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACG 12923 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 12922 AAGATTTGCAT 12912 >seq20086 Length=32257 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | | || | |||||||| || | ||||| || || Sbjct 22163 TTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAA 22104 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||||| | || || |||||||| || || || || || || ||||| Sbjct 22103 GATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTT 22044 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||| || || || || ||||| ||||||| ||||||||| Sbjct 22043 TTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGAC 21984 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAAT 288499 ||| |||| ||| | || ||||| ||||||||| Sbjct 21983 GAAGATCTACAT--TTTTCTTCTA-----TTTAATAAT 21953 >seq10467 Length=17661 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | | || | |||||||| || | ||||| || || Sbjct 3802 TTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAA 3743 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||||| | || || |||||||| || || || || || || ||||| Sbjct 3742 GATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTT 3683 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||| || || || || ||||| ||||||| ||||||||| Sbjct 3682 TTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGAC 3623 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAAT 288499 ||| |||| ||| | || ||||| ||||||||| Sbjct 3622 GAAGATCTACAT--TTTTCTTCTA-----TTTAATAAT 3592 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | | || | |||||||| || | ||||| || || Sbjct 13852 TTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAA 13911 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||||| | || || |||||||| || || || || || || ||||| Sbjct 13912 GATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTT 13971 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||| || || || || ||||| ||||||| ||||||||| Sbjct 13972 TTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGAC 14031 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAAT 288499 ||| |||| ||| | || ||||| ||||||||| Sbjct 14032 GAAGATCTACAT--TTTTCTTCTA-----TTTAATAAT 14062 >seq6376 Length=13110 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | | || | |||||||| || | ||||| || || Sbjct 12200 TTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAA 12141 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||||| | || || |||||||| || || || || || || ||||| Sbjct 12140 GATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTT 12081 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||| || || || || ||||| ||||||| ||||||||| Sbjct 12080 TTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGAC 12021 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAAT 288499 ||| |||| ||| | || ||||| ||||||||| Sbjct 12020 GAAGATCTACAT--TTTTCTTCTA-----TTTAATAAT 11990 >seq5238 Length=45295 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | | || | |||||||| || | ||||| || || Sbjct 22011 TTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAA 21952 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||||| | || || |||||||| || || || || || || ||||| Sbjct 21951 GATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTT 21892 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||| || || || || ||||| ||||||| ||||||||| Sbjct 21891 TTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGAC 21832 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAAT 288499 ||| |||| ||| | || ||||| ||||||||| Sbjct 21831 GAAGATCTACAT--TTTTCTTCTA-----TTTAATAAT 21801 >seq2143 Length=26640 Score = 116 bits (128), Expect = 9e-21 Identities = 141/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| | || | |||||||| | ||| || || |||||| Sbjct 5821 TCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAG 5880 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||| ||||| || |||| ||| || || ||||||||| Sbjct 5881 ATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTT 5940 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || ||||| ||||| ||||| ||||| || ||||||||| Sbjct 5941 TCAATGGTGTCTGATGGCTCAACATCGAG-GTGATGGTCTTTCCGGTAAGGGTCTTGACG 5999 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 6000 AAGATTTGCAT 6010 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | |||||| || || | |||| || ||| || ||||| || ||||| Sbjct 6499 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 6558 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||||||| | ||| || || |||||||| || | |||||| |||| Sbjct 6559 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 6618 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || || || || ||||| || | || | || || Sbjct 6619 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 6678 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 6679 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 6725 >seq1293 Length=7053 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | | || | |||||||| || | ||||| || || Sbjct 6489 TTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAA 6430 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||||| | || || |||||||| || || || || || || ||||| Sbjct 6429 GATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTT 6370 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||| || || || || ||||| ||||||| ||||||||| Sbjct 6369 TTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGAC 6310 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAAT 288499 ||| |||| ||| | || ||||| ||||||||| Sbjct 6309 GAAGATCTACAT--TTTTCTTCTA-----TTTAATAAT 6279 >seq17194 Length=120762 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||| ||||||||||| ||||| || || || |||||||| |||| || | || Sbjct 44450 TGGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTC 44509 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 44510 GACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 44560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179265659638160