Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq20086 109 5e-19 seq10467 109 5e-19 seq6376 109 5e-19 seq5238 109 5e-19 seq1293 109 5e-19 >seq20086 Length=32257 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| ||||||||||| | | ||| | ||||||| | || ||| || Sbjct 22168 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 22109 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | ||| || || || ||||| |||||||| ||||| || || ||| Sbjct 22108 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 22049 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | || || || | ||| | ||||| ||||||||||| Sbjct 22048 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 21989 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || | |||||| Sbjct 21988 TTGACGAAGATCTACATTTT 21969 >seq10467 Length=17661 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| ||||||||||| | | ||| | ||||||| | || ||| || Sbjct 3807 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 3748 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | ||| || || || ||||| |||||||| ||||| || || ||| Sbjct 3747 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 3688 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | || || || | ||| | ||||| ||||||||||| Sbjct 3687 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 3628 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || | |||||| Sbjct 3627 TTGACGAAGATCTACATTTT 3608 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| ||||||||||| | | ||| | ||||||| | || ||| || Sbjct 13847 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 13906 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | ||| || || || ||||| |||||||| ||||| || || ||| Sbjct 13907 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 13966 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | || || || | ||| | ||||| ||||||||||| Sbjct 13967 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 14026 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || | |||||| Sbjct 14027 TTGACGAAGATCTACATTTT 14046 >seq6376 Length=13110 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| ||||||||||| | | ||| | ||||||| | || ||| || Sbjct 12205 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 12146 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | ||| || || || ||||| |||||||| ||||| || || ||| Sbjct 12145 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 12086 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | || || || | ||| | ||||| ||||||||||| Sbjct 12085 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 12026 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || | |||||| Sbjct 12025 TTGACGAAGATCTACATTTT 12006 >seq5238 Length=45295 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| ||||||||||| | | ||| | ||||||| | || ||| || Sbjct 22016 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 21957 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | ||| || || || ||||| |||||||| ||||| || || ||| Sbjct 21956 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 21897 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | || || || | ||| | ||||| ||||||||||| Sbjct 21896 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 21837 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || | |||||| Sbjct 21836 TTGACGAAGATCTACATTTT 21817 >seq1293 Length=7053 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| ||||||||||| | | ||| | ||||||| | || ||| || Sbjct 6494 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 6435 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | ||| || || || ||||| |||||||| ||||| || || ||| Sbjct 6434 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 6375 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | || || || | ||| | ||||| ||||||||||| Sbjct 6374 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 6315 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || | |||||| Sbjct 6314 TTGACGAAGATCTACATTTT 6295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499484164196800