Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1748 127 2e-24 >seq1748 Length=94692 Score = 127 bits (140), Expect = 2e-24 Identities = 325/490 (66%), Gaps = 6/490 (1%) Strand=Plus/Plus Query 93881 GGTATAC-CATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCT 93939 ||| ||| |||| |||| || || ||||| ||| | || || || || ||||| | Sbjct 39514 GGTTTACTCATG-CCACTCCAACTCTGTTTAACTCTGGAACACCAAAACCTTAGATGAGT 39572 Query 93940 TCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAG 93999 || || ||| || | || || | |||||||| || ||||| || | | || Sbjct 39573 TCTTGCTTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATTTTTGAAACTTTAAAA 39632 Query 94000 GACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATC--AGTGTCCACGACGTAC 94057 | ||| | |||||||| || || || ||||| || ||||||| || ||| Sbjct 39633 TAAATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGTCTCAGTGTCC--GATGTAA 39690 Query 94058 GTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGC 94117 | || | ||||||||| | ||||| || || || || || | | || ||| Sbjct 39691 GAGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCCAATGT 39750 Query 94118 TCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTT 94177 | ||| ||||| || | || | |||||||| | |||||||| | || ||||| Sbjct 39751 TAAAGGTTTTCAATGACACCGCAAGATACGTGGATTAAGGTGGTGGAAAAAGAAAGGGAG 39810 Query 94178 CTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAA 94237 ||||||| |||||| | || || |||||||| || | | | ||| | | || ||| Sbjct 39811 CTTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACTCAGAA 39870 Query 94238 AGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAG 94297 |||| ||||| || || | | || || |||||||| ||||||||||| ||| |||| Sbjct 39871 AGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTGGACTCCAG 39930 Query 94298 ACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAAT 94357 | ||||| |||| | | || || ||| | |||| ||| | ||||| ||||||| Sbjct 39931 ATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTCATGTGTCCAAATGAAT 39990 Query 94358 GTCCCGGACT 94367 | || ||||| Sbjct 39991 GCCCAGGACT 40000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494564146491200