Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq18779 114 9e-21 seq2143 114 9e-21 seq17194 89.7 4e-13 seq10467 82.4 5e-11 seq6376 82.4 5e-11 seq5238 82.4 5e-11 seq1293 82.4 5e-11 >seq18779 Length=42783 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | ||| || |||||||| || || || || |||||||| || || Sbjct 12682 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 12623 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| ||||||||| | || | | ||||| ||| ||| Sbjct 12622 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 12563 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || ||| |||| || || || || ||| Sbjct 12562 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 12503 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| || ||||| || || || || || |||||||| ||| Sbjct 12502 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTT 12452 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| | || || |||||||| || || ||||| |||||||| || || Sbjct 13138 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 13079 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | ||| || ||||| | || | | ||||| ||| ||| Sbjct 13078 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 13019 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || ||||| || ||| | || || ||||| | || || Sbjct 13018 ATACCTTCCTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTATCTGAAGGCTCGAC 12960 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||| ||||| || || || || || || || || ||||||||| Sbjct 12959 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 12911 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || || || || || || || ||||| |||||||| ||| | Sbjct 13366 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCG--G 13309 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| | ||| || |||||| | || | | ||||| ||| || Sbjct 13308 ACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTG 13249 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| | || ||| || || |||| || || || || | Sbjct 13248 GGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAA 13189 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || || || || || || || || ||||||||| Sbjct 13188 CATCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 13139 >seq2143 Length=26640 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| | ||| || |||||||| || || || || |||||||| || || Sbjct 6499 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 6558 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| ||||||||| | || | | ||||| ||| ||| Sbjct 6559 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 6618 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || ||| |||| || || || || ||| Sbjct 6619 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 6678 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| || ||||| || || || || || |||||||| ||| Sbjct 6679 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTT 6729 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || || || || || || || ||||| |||||||| ||| | Sbjct 5785 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCG--G 5842 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| | ||| || |||||| | || | | ||||| ||| || Sbjct 5843 ACAAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTG 5902 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| | || ||| || || |||| || || || || | Sbjct 5903 GGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAA 5962 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||| ||||| || || || || || || || || ||||||||| Sbjct 5963 CATC-GAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 6011 >seq17194 Length=120762 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| | || || || || ||||| || ||||| |||||||| ||||| Sbjct 43825 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 43884 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| ||||||| | |||||| || ||| | || | | ||||| ||| |||| Sbjct 43885 AAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGA 43944 Query 15070 ATTCCTTCCTTGTC 15083 || ||||||||||| Sbjct 43945 ATACCTTCCTTGTC 43958 >seq10467 Length=17661 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGT 15022 || || || || || || || |||||||| |||||||||| | || || |||| ||| Sbjct 3822 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAAT--CAGACAAGGTTCTGCCGT 3765 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || | || ||||| | || | | |||||| || ||||| ||||| |||| Sbjct 3764 CTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGT 3705 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||| ||| || || |||| || ||||| | ||||| || | ||||| | Sbjct 3704 CTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAG 3645 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | ||||| |||| ||| || || || || | ||| ||| Sbjct 3644 TCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 3607 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGT 15022 || || || || || || || |||||||| |||||||||| | || || |||| ||| Sbjct 13832 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAAT--CAGACAAGGTTCTGCCGT 13889 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || | || ||||| | || | | |||||| || ||||| ||||| |||| Sbjct 13890 CTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGT 13949 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||| ||| || || |||| || ||||| | ||||| || | ||||| | Sbjct 13950 CTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAG 14009 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | ||||| |||| ||| || || || || | ||| ||| Sbjct 14010 TCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 14047 >seq6376 Length=13110 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGT 15022 || || || || || || || |||||||| |||||||||| | || || |||| ||| Sbjct 12220 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAAT--CAGACAAGGTTCTGCCGT 12163 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || | || ||||| | || | | |||||| || ||||| ||||| |||| Sbjct 12162 CTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGT 12103 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||| ||| || || |||| || ||||| | ||||| || | ||||| | Sbjct 12102 CTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAG 12043 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | ||||| |||| ||| || || || || | ||| ||| Sbjct 12042 TCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 12005 >seq5238 Length=45295 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGT 15022 || || || || || || || |||||||| |||||||||| | || || |||| ||| Sbjct 22031 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAAT--CAGACAAGGTTCTGCCGT 21974 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || | || ||||| | || | | |||||| || ||||| ||||| |||| Sbjct 21973 CTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGT 21914 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||| ||| || || |||| || ||||| | ||||| || | ||||| | Sbjct 21913 CTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAG 21854 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | ||||| |||| ||| || || || || | ||| ||| Sbjct 21853 TCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 21816 >seq1293 Length=7053 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGT 15022 || || || || || || || |||||||| |||||||||| | || || |||| ||| Sbjct 6509 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAAT--CAGACAAGGTTCTGCCGT 6452 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || | || ||||| | || | | |||||| || ||||| ||||| |||| Sbjct 6451 CTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGT 6392 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||| ||| || || |||| || ||||| | ||||| || | ||||| | Sbjct 6391 CTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAG 6332 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | ||||| |||| ||| || || || || | ||| ||| Sbjct 6331 TCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 6294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357279971010200