Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq18779 91.5 1e-13 seq2143 86.0 6e-12 >seq18779 Length=42783 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| || || || || | |||| | ||| || | ||| Sbjct 12886 TGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGC 12827 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||| || || || ||||| ||||| |||||||| || || Sbjct 12826 TTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGGATCTTG 12767 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||| || | ||| || || ||||| | || || || || Sbjct 12766 GCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACATCAAGAGTGATGGTCTTTCCAGTG 12707 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 12706 AGGGTCTTCACGAAGATTTGCAT 12684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| || || || || | |||| | ||| || | ||| Sbjct 13114 TGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGC 13055 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||| || || || || || ||||| || ||||| || ||| Sbjct 13054 TTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCTTGGATCTTT 12995 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||| || |||| |||||| || | || | || || ||||| Sbjct 12994 GCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATGGTCTTTCCGGTA 12935 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 12934 AGGGTCTTGACGAAGATTTGCAT 12912 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| || | || | || || ||||||||||| ||||| || || || Sbjct 12685 ATACCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA 12626 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| | || || | ||| || || ||| | || | || ||| || || || Sbjct 12625 CTAAGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGT 12566 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| ||| | |||||| || | ||| Sbjct 12565 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCA 12506 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || ||||| || || || || || || |||||||| Sbjct 12505 ACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 12456 >seq2143 Length=26640 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| || | || | || || ||||||||||| ||||| || || || Sbjct 6496 ATACCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA 6555 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| | || || | ||| || || ||| | || | || ||| || || || Sbjct 6556 CTAAGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGT 6615 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| ||| | |||||| || | ||| Sbjct 6616 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCA 6675 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || ||||| || || || || || || |||||||| Sbjct 6676 ACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 6725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451857880971200