Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq17288 118 1e-21 >seq17288 Length=143976 Score = 118 bits (130), Expect = 1e-21 Identities = 211/303 (70%), Gaps = 9/303 (3%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | ||| ||||| | || ||||| ||||| |||||| ||||| Sbjct 116979 AGCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACC 116920 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||| || |||||||| | |||||| || | || || || || ||||||||||| Sbjct 116919 TGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGAT 116860 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG-GAGCGGGACTTTGTATCAA 127697 ||||| | | ||||| |||| ||| | ||| || ||| |||| || | | ||| Sbjct 116859 GCCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCG---CTCT-CACCAA 116804 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACA--TGGGACGGTCTGGATCGCTTC 127755 |||||| || ||||| | ||||| | | | |||| ||||| | | ||| |||| Sbjct 116803 TCCACTTAATGGCCCATTCAGCCTTCT--TAGTTACAACTGGGATGTTAGTGATGGCTTT 116746 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 ||||| || ||| || ||| || ||||| | || |||||| ||| || || Sbjct 116745 GAAGAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGT 116686 Query 127816 TTC 127818 || Sbjct 116685 CTC 116683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613309957435200