Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq17288 156 4e-33 seq18779 129 6e-25 seq2143 129 6e-25 seq17194 105 7e-18 >seq17288 Length=143976 Score = 156 bits (172), Expect = 4e-33 Identities = 385/579 (66%), Gaps = 9/579 (2%) Strand=Plus/Minus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 ||| |||||| | | | |||||||||||| |||| || ||||| || |||||||| Sbjct 117000 CAAGTGCTTGTAGAGAAGGCAAGCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAG 116941 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 || || ||| || | || ||||||||||| || || || ||||| || || | | Sbjct 116940 CTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCA 116881 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 ||| || || ||||||| |||||||| || |||||||| | || | ||| |||| Sbjct 116880 GAAGGATCCTGAGAAGAAGATGCCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAA 116821 Query 133056 CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 | || | | | ||||| | |||||||| ||||| | | || || Sbjct 116820 GCTAGCGCTCTCAC---CAATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGG 116764 Query 133116 CATCGTTTCGATGGCGTTCAACAAACGGAGT--TTCTCTTCCGAGGAACGCACGTAGGTG 133173 || | |||||| || || | | | | ||||| | | | || | | |||| Sbjct 116763 GATGTTAGTGATGGCTTTGAAGAG--GAACTCCTTCTCGTGTGGGTCACTGATGAGGGTG 116706 Query 133174 TCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAA 133233 |||||||| || || | || ||||| | ||||||||| ||||| ||||| || Sbjct 116705 TCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAG 116646 Query 133234 AAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTG 133293 || || || || || || || | ||| | ||| | || | | || || |||||| Sbjct 116645 AAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTG 116586 Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353 ||||| ||||| ||| ||||||||||| || ||||||||||| || || | ||||||| Sbjct 116585 ACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTG 116526 Query 133354 TCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAA 133413 ||||| | | |||||| || ||| ||| ||||| | ||||| |||||| Sbjct 116525 TCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCGAGGTCGATTTCCTCAGAGGTCCAG 116466 Query 133414 AACGACGCC-TCGGCTTTTTTGTACATACTCCACATGTC 133451 || | ||| || | | |||||||| |||| ||||| Sbjct 116465 AAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATGTC 116428 >seq18779 Length=42783 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| ||||| || || ||||| ||||| |||||||| | ||||| ||| | Sbjct 12452 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 12511 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | |||| | | ||| | || | || |||| ||||| || ||||| || |||| Sbjct 12512 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 12571 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| | ||||| | ||| ||||| || || || |||| | ||||| | ||||| Sbjct 12572 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTA 12631 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||| |||||| | || || || ||||| || Sbjct 12632 CAACATCCAGAAGGAATCAACCCTTCACTTGGTTCT 12667 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || ||||||||| | ||||||||| | | Sbjct 12912 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 12971 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||| |||| ||||| || || || || |||| ||| Sbjct 12972 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 13031 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | ||||||| || || || || || || || | | ||||| | ||||||||| Sbjct 13032 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 13091 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || || ||||| || | |||||||| || Sbjct 13092 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 13138 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || |||||||| | || || ||| | | Sbjct 12684 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 12743 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | || |||| || || || || |||||| |||| || Sbjct 12744 GACACTATTGAAAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 12802 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||||| || || || || || || || | | ||||| | |||||||| Sbjct 12803 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 12862 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || || ||||| || | |||||||| || Sbjct 12863 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 12910 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || ||||||||| |||| || ||| | | Sbjct 13140 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 13199 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || ||| ||||| || || || || |||| || Sbjct 13200 GACACCATTGAAAACG-TGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCA 13258 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| || || || || || |||| | ||| | ||||||||| Sbjct 13259 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAA 13318 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| | || || || ||||| || Sbjct 13319 CATCCAAAAGGAGTCAACTCTCCACTTGGTCCT 13351 >seq2143 Length=26640 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| ||||| || || ||||| ||||| |||||||| | ||||| ||| | Sbjct 6729 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 6670 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | |||| | | ||| | || | || |||| ||||| || ||||| || |||| Sbjct 6669 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 6610 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| | ||||| | ||| ||||| || || || |||| | ||||| | ||||| Sbjct 6609 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTA 6550 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||| |||||| | || || || ||||| || Sbjct 6549 CAACATCCAGAAGGAATCAACCCTTCACTTGGTTCT 6514 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || ||||||||| |||| || ||| | | Sbjct 6010 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACC-TCGATGTTGAGCCATCA 5952 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || ||| ||||| || || || || |||| || Sbjct 5951 GACACCATTGAAAACG-TGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCA 5893 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| || || || || || |||| | ||| | ||||||||| Sbjct 5892 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAA 5833 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| | || || || ||||| || Sbjct 5832 CATCCAAAAGGAGTCAACTCTCCACTTGGTCCT 5800 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || || || |||||| |||| ||||| | ||||||| || || || Sbjct 6154 AAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTTTGCTGGAAAG 6095 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | | ||||| | |||||||||||||||||||| | || || || Sbjct 6094 CAACTTGAAGATGGAAGAACCCTTAGTGACTACAACATCCAAAAGGAGTCAACCCTTCAC 6035 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || | |||||||| || Sbjct 6034 TTGGTCCTCAGATTGAGAGGTGG 6012 >seq17194 Length=120762 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| |||||||||||||| || |||| |||||| | ||||||| ||| || ||| Sbjct 44704 AAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGAGACTCATTTTCGCTGGAAAA 44645 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||| |||| |||| | |||||| ||||||||||||||| ||||| | || || || Sbjct 44644 CAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTTCAC 44585 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || | | ||||| || Sbjct 44584 TTGGTCTTGAGACTCAGAGGAGG 44562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500011994444800