Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq19259 248 7e-60 seq259 132 4e-25 seq2762 123 2e-22 seq1609 113 3e-19 seq4 105 5e-17 seq5958 102 6e-16 seq4749 102 6e-16 >seq19259 Length=46844 Score = 248 bits (274), Expect = 7e-60 Identities = 942/1459 (65%), Gaps = 37/1459 (3%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || |||||||| | ||| || |||||||| ||||| ||||| ||||| |||| ||| Sbjct 32639 ATTCCGTTGGCATCAATATCGAAAGTGACTTCGATTTGTGGGACACCTCTGGGAGCGGGT 32580 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| ||||| | || ||| | || || | ||||| || || | | || |||| Sbjct 32579 GGGATACCTTCAAGGTTGAATTTACCGAGTAAGTGGTTATCCTTGGTCATTGATCTTTCA 32520 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || ||||| | ||| || || | | ||| || || | ||| || || || | | Sbjct 32519 CCTTCGAAGACTTGAATCAAGACACCTGGTTGGTTGTCAGCATAGGTGGTGAAGATTTGT 32460 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || || || || |||||||| ||| | | ||||| | ||| || || Sbjct 32459 GACTTCTTGGTTGGGATGGTAGTGTTTCTTGGAATGAGAACAGTCATGACACCTCCAGCA 32400 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT-TTGAAGTTTTTC 517572 ||||| | ||| || || || || ||||| | |||| | || |||| ||| | Sbjct 32399 GTTTCAATACCGGTTGAGAGTGGGGTAACATCCAAAAGGAGGAGATCCTTGACGTTGCTG 32340 Query 517573 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 517632 || || ||| |||||||| ||||| | |||||||| || |||||||||||||| Sbjct 32339 -TCTCCTTCTCCAGTGAGAATAGCAGCTTGGACGGCAGCACCGTAAGCAACAGCTTCATC 32281 Query 517633 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC 517692 || || | | | || || | || || ||||| || | || || | |||| || Sbjct 32280 TGGGTTGATTGATCTGTTAAGGGTCTTTCCGTTGAAGAAGTCGGAGAGCATTTGTTGAAC 32221 Query 517693 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752 ||| || || | | ||| || ||||| || |||| ||| || | ||| || | || Sbjct 32220 CTTGGGGATTCTGGTTGAACCACCAACCAAGACAACTTCGTGGATTTGTCCCTTGGCGAG 32161 Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACA 517812 ||| ||| | || ||||| |||||| | || ||| || | || ||| Sbjct 32160 GCCTGAGTCCTTAAGGACGTTTTCTACGGGTGGCATACATTTTCTGAAGAGATCCATACA 32101 Query 517813 AAGTTCTTCGAATTTAGCTCTAG---TAAGAGTGACATTATAATCAATTCCTTCGAACAA 517869 ||||| ||||| |||||||| | | ||||| || | || || || | ||| Sbjct 32100 GAGTTCCTCGAACTTAGCTCTTGAGATTTGAGTG---TTGAAGTCTTCACCCTC-AGCAA 32045 Query 517870 -AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 517928 || || |||||| | | |||| | || || || | || || || | Sbjct 32044 GAGTTTCGCATTCAATTGGGGCTTGATGGGCAGCTGAAAGAATTCTCTTTGCCTTCTCGC 31985 Query 517929 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC----TGATTGAT-TCAA-ATCTGTTTTAT 517982 || || || ||||||| | ||| | || ||||| |||| | | || || | Sbjct 31984 ATTGAGTTCTGAGTCTTCTGAGTGCTCTGGCGTTTCCGTTGATGTCAATACCAGTCTTCT 31925 Query 517983 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 518042 ||||||| || |||| || | ||||| | || || ||||||||||||| Sbjct 31924 ------TCTTGAATTCAGCAACGCAATAGTCGACAAGTCTGTTGTCGAAATCTTCACCTC 31871 Query 518043 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 518102 |||| | || | || || || | |||| ||| | || ||||||| | | | Sbjct 31870 CCAAATGGGTGTGACCGTTGGTGGCCTTAACTTCGAAGATACCTTCTTCAATGGTGAGGA 31811 Query 518103 GAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT-TTGTCT 518161 | | ||||| || |||||||| | ||| || || || || || ||||| ||| Sbjct 31810 GGGAGACATCGAAAGTACCACCACCGAGATCGAAGATGAGAACGTT--TTTCTCTTGGGA 31753 Query 518162 TGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 518220 || ||| || || | ||| || |||| ||| ||||||||||| || || || ||||| | Sbjct 31752 TGATTTCTTGTCCAAACCGTAAGCAATAGCGGCAGCAGTTGGCTCGTTGATGATTCTGAG 31693 Query 518221 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280 ||| || | ||| | || | || ||||| || ||||||||||| ||||| ||||| || Sbjct 31692 AACGTTCATACCTGAGATGGTACCAGCATCCTTGGTGGCTTGTCTCTGTGAGTCGTTGAA 31633 Query 518281 ATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTTGCCG 518339 ||| || || ||||| ||||| || | | || ||||| || |||||| || Sbjct 31632 ATAAGCTGGGACAGTGATAACAGCGTTCTTGACAGTCTTT-GAAAGATAAGCTTCAGCGA 31574 Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATT 518399 ||| ||||| || | || | ||| ||||| |||| ||| | | | | ||||| || Sbjct 31573 TTTCCTTCATCTTGATCAAGACCATAGATGAGATTTCTTCAGCGTGGAACTTCTTGGCTT 31514 Query 518400 CATTTTGATATGATACTTCAAAATATGGTTTATTACC--AACATTAAT-AACTTTAAATG 518456 || | || || ||| ||| || | | | | || | || || |||| Sbjct 31513 CACCCTTGTAGTCGACAACAATGACTGGCTTGTCAGCTGGTCCTTGCTCGACCTTGAATG 31454 Query 518457 GCCAGTATTTCATATCTGATTGAACACTTTG---GTCATTAAAATCTCTACCAATTAATC 518513 |||| | ||||| || ||||| |||| ||| || | ||| || || | || Sbjct 31453 GCCAATGCTTCATGTCGTCTTGAA---TTTGCTTCTCAGAGAATTTTCTTCCGATAAGTC 31397 Query 518514 GTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTC 518573 || || || || | || || | || || | ||| |||||| ||||||| |||| Sbjct 31396 TCTTGGCGTCGAAGACGGTGTTCTTGGGGTTTCTAGCAACTTGATTCTTGGCTGAGTCTC 31337 Query 518574 CAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 518633 |||| || ||| || || || | || ||||||||||| ||| || ||||||| Sbjct 31336 CAATAAGTCTCTCTTCTTCAGTGAAAGCGACGTATGATGGAGTGGTGTTGTTTCCTTGAT 31277 Query 518634 CATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTC 518693 | || | || ||||||||||| | || |||| |||||||| ||| |||| || | Sbjct 31276 CGTTGGGGATGATTTCAACTTTGTCGTTGAGCCACACACCTACGCAAGAGTAAGTGGTGC 31217 Query 518694 CTAAATCAATACCAATAGC 518712 | | ||| || |||||||| Sbjct 31216 CGAGATCTATTCCAATAGC 31198 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 |||||||| |||| ||| || |||||||| || || || ||| | ||||| | | ||| Sbjct 31739 AAACCGTAAGCAATAGCGGCAGCAGTTGGCTCGTTGATGATTCTGAGAACGTTCATACCT 31680 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 | || || ||| ||| || ||||||||||||| ||| || ||||| ||||| ||| Sbjct 31679 GAGATGGTACCAGCATCCTTGGTGGCTTGTCTCTGTGAGTCGTTGAAATAAGCTGGGACA 31620 Query 322361 GTAATAACTGCTTTATTAATAGGTTTTTGTAA 322392 || ||||| || || || | | || |||| || Sbjct 31619 GTGATAACAGCGTTCTTGACA-GTCTTTGAAA 31589 >seq259 Length=203576 Score = 132 bits (146), Expect = 4e-25 Identities = 216/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 635447 CTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATT 635506 || ||||| || || |||||||| || ||| | | || ||| |||||| | ||| || Sbjct 72166 CTTATTTTAACTGAAGGAGATTCTGCAAAATCTCTAGCAATGAGTGGTCTGTAAGTTGTT 72225 Query 635507 GGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCT 635566 || |||||| || ||||||||||||||| ||||||||| | || ||||| || ||| Sbjct 72226 GGCAGAGATCGTTTTGGAGTTTTCCCACTAAGAGGAAAATTATTAAATGTAAGAGATTGC 72285 Query 635567 AGTCCTaaaaaaaTTGCTGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTT 635626 || || ||||| ||||| ||||| || | || | || || | || || Sbjct 72286 GGTATGAAGTAAATTTTAGATAACGAGGAGATCCAAAATATTATCAAGATACTCGGGCTA 72345 Query 635627 GAACAAGGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTT 635686 | || | | ||||||||||| || || |||||||| ||| |||||| | Sbjct 72346 TATATGGGTAGATAATATGATGATCTTAAGACATTGCGATATGGATCTATAATGATTATG 72405 Query 635687 GCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGT 635746 || ||| ||||| |||||| | |||||||| ||| | ||||| || ||||| ||| Sbjct 72406 GCAGATTAAGATCATGATGGATCTCATATCAAGGGACTTATCATAAACTTTATACATAAC 72465 Query 635747 TTTTGGCCATC 635757 || |||||||| Sbjct 72466 TTCTGGCCATC 72476 >seq2762 Length=67969 Score = 123 bits (136), Expect = 2e-22 Identities = 244/360 (68%), Gaps = 17/360 (5%) Strand=Plus/Plus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||| ||||||||||||||||| | |||| || ||||| || | ||||| ||| Sbjct 57766 ATCGAAATCTTCACCTCCCAAATGGGTATCACCGCTAGTAGCGACGACCTCGAAAACTCC 57825 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 || |||| || | ||| | ||||| || || ||||| | ||| || | | | Sbjct 57826 ATTATCAATAGTAAGAAGGGAGACATCGAAAGTACCTCCACCAAGATCGAAGACGATAAT 57885 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 ||| | ||| |||| || || || | |||||| |||| ||| |||||||||| | Sbjct 57886 GTTCTTCTCTC---CTTGCTTCTTGTCCATACCATAGGCAATAGCTGCAGCAGTTGTAT- 57941 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 || ||| ||| |||||||| || || ||||| || || |||||||| Sbjct 57942 ----ATCATT------ACA---AGACCAGCGATCAAACCGGCATCCTTGGTTGCTTGTCT 57988 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAAT 518325 ||||||||| || |||||||| || ||||| ||||| |||| | || ||| |||| | Sbjct 57989 TTGTGAATCATTGAAATATGCTGGGACAGTGATAACTGCATGCTTAACGTCTCTACCGAG 58048 Query 518326 ATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385 ||| || || | | ||||| || | | |||||| | ||||| || |||||||| Sbjct 58049 ATAGGCTTCAGCAATCTCCTTCATCTTGATGAGAATCATAGCTGAAACTTCCTCTGGGGA 58108 >seq1609 Length=68617 Score = 113 bits (124), Expect = 3e-19 Identities = 192/273 (70%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 671533 TGTTGAAGGAAAAAGAATTCAAATCAGATTCAATGGTAGAACACTTCCAATGTTCCCTAA 671592 ||||||||| |||||| ||||| | | || || |||||| | || ||||| || Sbjct 21507 TGTTGAAGGTAAAAGAGTTCAATTTGGCTTTAAATCTAGAACTTTACCTCACTTCCCAAA 21566 Query 671593 ATTCGATGACAGTGCATTTTCCAGAGGTTTTTGTCGA-AATTCTTTTATTGAGGGTCTTG 671651 ||| | || || ||| | ||||||| ||| ||| || ||| || | || Sbjct 21567 GCATGATTATGGTCCAGCTTCTAAAGGTTTT-GTCATTAATAATTATATC-AGTGGGTTA 21624 Query 671652 GA-CCTTTTGAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCT 671710 || ||| ||||| |||||||| | |||| ||| ||||||||| ||||| |||| || Sbjct 21625 GATCCTCCAGAATTCTTCTTCCATGCTATGGGAGGACGTGAAGGTCTTATTGATACAGCA 21684 Query 671711 ATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATC 671770 | |||||| | || || || ||||||||||||| ||| || ||| || ||||||||| Sbjct 21685 GTCAAAACTTCGGAAACAGGATATATTCAAAGAAGACTCGTAAAAGCACTGGAAGATATC 21744 Query 671771 AAACAAGAATATGATGGTACAGTAAGAAATGCA 671803 | | ||||||| ||||| || || ||| || Sbjct 21745 ATGGTAAAATATGACGGTACTGTGAGGAATTCA 21777 >seq4 Length=44049 Score = 105 bits (116), Expect = 5e-17 Identities = 148/202 (73%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 || ||||||| || |||||||||| ||| | | || | || || ||| |||| Sbjct 5014 AGATACATCAAAAGTGCCACCACCCAAGTCATAGACTAGAA-AT--ATACCTT---CTTG 4961 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 || ||||||||||||| || | ||| || |||||||||||||||| || ||| ||||| Sbjct 4960 CTTACTATCAAGACCATAAGCTATAGCTGCGGCAGTTGGTTCATTAAGAAGTCTTAAAAC 4901 Query 518224 ATTAAGACCAGC-AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 ||| | || || || || |||||| ||| || || | |||| ||||| ||||| Sbjct 4900 ATTTAACCCCGCTAACTC-AGCTGCATGTTTGGTCGCAATCCGCTGTGCATCGTCAAAAT 4842 Query 518283 ATGCAGGAACAGTAATAACGGC 518304 | |||||||| |||||||| || Sbjct 4841 AGGCAGGAACGGTAATAACCGC 4820 >seq5958 Length=11399 Score = 102 bits (112), Expect = 6e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 ||||||||||| | || | || ||||||||||| || || || |||||| ||| | | Sbjct 2358 TTATCAAGACCGAAGGCGAGTGCGGCAGCAGTTGGCTCGTTGATGATTCTCTTAACTTCA 2417 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||| || ||| | || ||||| || || |||||||| || || || || ||||| || Sbjct 2418 AGATTTGCGATTTTACCAGCATCCTTGGTAGCTTGTCTCTGAGAGTCATTGAAATAAGCT 2477 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 |||||||||| ||| || || | | | |||||| | |||||| Sbjct 2478 GGAACAGTAACAACAGCCTCCTTGATTGATTTACCTAGATAAGC 2521 >seq4749 Length=38707 Score = 102 bits (112), Expect = 6e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 ||||||||||| | || | || ||||||||||| || || || |||||| ||| | | Sbjct 21338 TTATCAAGACCGAAGGCGAGTGCGGCAGCAGTTGGCTCGTTGATGATTCTCTTAACTTCA 21279 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||| || ||| | || ||||| || || |||||||| || || || || ||||| || Sbjct 21278 AGATTTGCGATTTTACCAGCATCCTTGGTAGCTTGTCTCTGAGAGTCATTGAAATAAGCT 21219 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 |||||||||| ||| || || | | | |||||| | |||||| Sbjct 21218 GGAACAGTAACAACAGCCTCCTTGATTGATTTACCTAGATAAGC 21175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779546088878320