Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq19259 425 7e-114 seq1748 105 8e-18 seq259 89.7 7e-13 seq265 86.0 8e-12 >seq19259 Length=46844 Score = 425 bits (470), Expect = 7e-114 Identities = 1096/1650 (66%), Gaps = 25/1650 (2%) Strand=Plus/Minus Query 6510 TCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTA--CTT 6567 ||||||| | ||||||||||||| || ||||| || |||| || | || | ||| Sbjct 32833 TCATTTGGAAGCAGTAGTTTTCGAAACTGTTCTTAGCTTCGA--TTCTGAGCTTCATCTT 32776 Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 ||||| || |||| || || || || || |||||||||||| || || ||||| Sbjct 32775 CTCATCCTCGCCTTTGTATTTCTCAGCTTCACTGACCATCTTTTCGATTTCCTCTTTGCT 32716 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | ||| ||||| || || ||||| |||||||| | |||||| | |||| || | Sbjct 32715 GAGTCTACCCTTGTCGTTGGTAATGGTAATCTTGTTAACTTTACCAGTTCCCTTGTCGAC 32656 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || ||||| || || || ||||||| |||||| | || | |||||||| Sbjct 32655 GGCTGAGACGTTCAAGATTCCGTTGGCATCAATATCGAAAGTGACTTCGATTTGTGGGAC 32596 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAA--TCAAATGTACCAAGTAAACTGTTATCC 6805 ||| || || |||| ||| ||||| || || | ||| |||| ||||| ||||||| Sbjct 32595 ACCTCTGGGAGCGGGTGGGATACC--TTCAAGGTTGAATTTACCGAGTAAGTGGTTATCC 32538 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGT 6865 | | | | | ||||||||| |||||| ||| || | ||||| || || Sbjct 32537 TTGGTCATTGATCTTTCACCTTCGAAGACTTGAATCAAGACACCTGGTTGGTTGTCAGCA 32478 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||||||||| ||||| | ||| || || || ||||| ||||| | Sbjct 32477 TAGGTGGTGAAGATTTGTGACTTCTTGGTTGGGATGGTAGTGTTTCTTGGAATGAGAACA 32418 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||| || |||||| | || || || || || || ||||| || | Sbjct 32417 GTCATGACACCTCCAGCAGTTTCAATACCGGTTGAGAGTGGGGTAACATCCAAAAGGAGG 32358 Query 6986 AGGTCTTGAACAGATTCGTTC-CCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 || || | || | | | || ||||| || || | || || |||||||| | || || Sbjct 32357 AGATCCTTGAC-GTTGCTGTCTCCTTCTCCAGTGAGAATAGCAGCTTGGACGGCAGCACC 32299 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT-TCTTTACCGTTAAAATAAT 7103 ||| || || || ||||| ||||| || | | | || || ||||| ||||| || | | Sbjct 32298 GTAAGCAACAGCTTCATCTGGGTTGATTGATCTGTTAAGGGTCTTT-CCGTTGAAGAAGT 32240 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 | || | ||||||||||| || ||||||| || || ||||| ||||| || | ||| | Sbjct 32239 CGGAGAGCATTTGTTGAACCTTGGGGATTCTGGTTGAACCACCAACCAAGACAACTTCGT 32180 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | || || ||| |||||| ||| ||||| || ||| |||||||| Sbjct 32179 GGATTTGTCCCTTGGCGAGGCCTGAGTCCTTAAGGACGTTTTCTACGGGTGGCATACATT 32120 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 | | ||| | |||||||| |||||||| || || | | || || | ||| | Sbjct 32119 TTCTGAAGAGATCCATACAGAGTTCCTCGAACTTAGCTCTTGAGATTTGAGTGTTGAAGT 32060 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGT---GCCGTCGAAGATAACG 7340 | | || || | | || |||||| | | ||| || | ||| | || Sbjct 32059 CTTCACCCTCAGCAAGAGTTTCGCATTCAATTGGGGCTTGATGGGCAGCTGAA-AGAA-- 32003 Query 7341 TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAA 7400 ||| |||||| ||| || |||| | | | || || | | ||| ||| | Sbjct 32002 TTCTCTTTGCCTTCTCGCATTGAGTTCTGAGTCTTCTGAGTGCTCTGGCGTTTCCGTTGA 31943 Query 7401 TATCTTTCTTATGTTTACGT-TTAAACTCTTCAGAGAAGT-GTCGAAGGAGTCTCGAATC 7458 | || | | || | | | || || || || | | | ||||| ||||| || Sbjct 31942 TGTCAATACCA-GTCTTCTTCTTGAATTCAGCAACGCAATAGTCGACA-AGTCTGTTGTC 31885 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 |||||||||||| ||||| || || | || ||| || || ||||| ||||||||| | Sbjct 31884 GAAATCTTCACCTCCCAAATGGGTGTGACCGTTGGTGGCCTTAACTTCGAAGATACCTTC 31825 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||||||| | | | || ||||| || ||||||||||| || || || ||||| ||||| Sbjct 31824 TTCAATGGTGAGGAGGGAGACATCGAAAGTACCACCACCGAGATCGAAGATGAGAACGTT 31765 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 | || | | | ||||| || | |||||| || ||||| || || ||||| || || Sbjct 31764 TTTCTCTTGGGATGATTTCTTGTCCAAACCGTAAGCAATAGCGGCAGCAGTTGGCTCGTT 31705 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || || | ||| ||||| || | || || | ||||| || || ||||||| || Sbjct 31704 GATGATTCTGAGAACGTTCATACCTGAGATGGTACCAGCATCCTTGGTGGCTTGTCTCTG 31645 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || ||||| || || || ||||| || | || |||| | |||| |||| ||||| Sbjct 31644 TGAGTCGTTGAAATAAGCTGGGACAGTGATAACAGCGTTCTTGACAGTCTTTGAAAGATA 31585 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | ||| ||||| || ||||| ||| | | ||||| ||||| || |||||||| || Sbjct 31584 AGCTTCAGCGATTTCCTTCATCTTGATCAAGACCATAGATGAGATTTCTTCAGCGTGGAA 31525 Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGAT 7878 || || | |||||| || | || || |||| | || || || || | || | Sbjct 31524 CTTCTTGGCTTCACCCTTGTAGTCGACAACAATGACTGGCTTGTCAGCTGGTCCTTGCTC 31465 Query 7879 AACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCC 7938 ||||| | | ||||| ||||| |||||||| | || | || || || |||||||| Sbjct 31464 GACCTTGAATGGCCAATGCTTCATGTCGTCTTGAATTTGCTTCTCAGAGAATTTTCTTCC 31405 Query 7939 GATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGC 7998 |||||| | ||| || || || || ||||| |||||||| | || ||| ||||| || Sbjct 31404 GATAAGTCTCTTGGCGTCGAAGACGGTGTTCTTGGGGTTTCTAGCAACTTGATTCTTGGC 31345 Query 7999 CGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCG 8058 | ||| || ||||| | || | | ||| || || |||||||| ||||| || || Sbjct 31344 TGAGTCTCCAATAAGTC--TC-TCTTCTTCAGTGAAAGCGACGTATGATGGAGTGGTGTT 31288 Query 8059 ATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGA 8118 || ||||| ||||| | || ||||| || |||||| |||| || || ||||| || Sbjct 31287 GTTTCCTTGATCGTTGGGGATGATTTCAACTTTGTCGTTGAGCCACACACCTACGCAAGA 31228 Query 8119 ATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || || || | ||| || || || || Sbjct 31227 GTAAGTGGTGCCGAGATCTATTCCAATAGC 31198 >seq1748 Length=94692 Score = 105 bits (116), Expect = 8e-18 Identities = 943/1506 (63%), Gaps = 59/1506 (4%) Strand=Plus/Minus Query 104677 ACAAATTCACCCGCGAGTGTTCGTCTCAAATAGATATTGGTCGTATACGGTTCGAAACAC 104736 || || ||||| || | | || ||| ||| | ||||| ||||| |||||||| | Sbjct 40834 ACGAACTCACCAGCTAATACTCTTCTTGTATATACATTGGAAGTATATGGTTCGAAGGTC 40775 Query 104737 TCGTTGTTCCCTAAAATCTGGGATGTGGATGCGGTAGGCATAGGTGCAAGAAGAAGACTA 104796 |||||||| || | |||| ||||| || || || |||||||| ||||| ||||| | Sbjct 40774 TCGTTGTTTCCAAGGATCTAAGATGTCGAGGCAGTTGGCATAGGAGCAAGGAGAAGTGAA 40715 Query 104797 TTCATAGTTCCTTTCTTAACAAG---TTTACGCA-TGGCATTCCAATCGTATCGACCACT 104852 || ||| ||| | | || | ||| | || | || | ||| ||||||| | || Sbjct 40714 TTTCTAGCTCCGTATTAAATGACGTCTTTTCTCAATTGC-TCCCAGTCGTATCTATCAG- 40657 Query 104853 AAACTTTGGGTCTCGATCCCACATATCGAATTGAAGAATA--CCTTTACTAAACGGTGAC 104910 | | | ||| || ||| | ||| |||| |||||| |||||| | || || Sbjct 40656 -AGCAAGGTTTCTT-ATTCCATAAATCAAATT--AGAATAGACCTTTAGAGAGTGGGGAT 40601 Query 104911 CCCTTAAACGTTTCATAAGGACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGAT 104970 || ||| |||||||| ||||| | | | ||| || || | ||| | | Sbjct 40600 CCTGGAAAAGTTTCATAGGGACCCTCGACCTTGGCTTACTCCATTGAAGCTTCCATGGCG 40541 Query 104971 GCGTGGTAGATAGTTTCGAATATA-------TCAATGTT-GAGTTTTCTCGATTCTTCTG 105022 || || |||||||| ||||| || |||| | ||| ||| | ||| || Sbjct 40540 GCATGATAGATAGTCTCGAAAATGAGTTCGTTCAACCTGAGAGCTTTTT-GATCCT---- 40486 Query 105023 AACCGAATGTCATTCTTAACATGATAAACACGTCAGCGAGACCCTGAACACCAATACCGA 105082 |||||| || | ||||| || | || || | || | |||||||| || | Sbjct 40485 ---CGAATGGGATCTTCAACATTTAAAGGGCATCTGCAAATCCTTAGACACCAATTCCAA 40429 Query 105083 TGGGTCTGTGACGCATATTTGAACGTTTCCCGTTTTCGGTT--GGGTAAAAGTTTTTATC 105140 | |||||||| | | ||||||| |||| | || || || || | || ||||| Sbjct 40428 TTGGTCTGTGTCTAAGATTTGAA--TTTCTAGCTTCAGGAACAGGATAGTAATTGTTATC 40371 Query 105141 AATAACCTTGTTTAAGTTACGTGTAACCATTTTCGTAACACGATGTAACTCTTCATGGTT 105200 |||| || |||| || |||| | || || || |||||||| |||| | Sbjct 40370 TATAATTTTATTTAGATTCTTAGTAATTCTCTTGGTCACGTAATGTAACTTCTCATAATC 40311 Query 105201 AAACTCGTTCTTCTCGACATCAAC--GTATTTTGGTAACGCGATTGATGCGAGATTACAT 105258 | | || | | || | | ||| | || | ||| || || || || |||||||| Sbjct 40310 ATATTCTTAGGTTTC--CTTTAACACGAATCTATTTAAAGCAATAGAAGCTAGATTACAG 40253 Query 105259 ACGGCGGTTTCTTCCTTATCCGTAAACTCCAGAATTTCTGTACACAAATTTGATGATTTA 105318 || || ||| || | ||||| || | || || || || | || || ||| Sbjct 40252 ACAGCCACTTCATCTGGACTGGTAAATTCGACGATCTCAGTGCAAAGGTTAGAACTCTTA 40193 Query 105319 ATCGTACCAACGTGTTTATGGTTCGACTTTTCATTACACGCGTCTTTGTAAAGCATATAT 105378 || || |||| | || | ||| || ||| ||| || || ||||||||||||||||| Sbjct 40192 ATTGTGCCAAGATTTTACTAGTTGGATTTTCTATTGCAAGCATCTTTGTAAAGCATATAA 40133 Query 105379 GGGGTTCCCGTTTCACTTTGGGATTTAATAATTGCTTTCCAAATCTCCGAAGCTGGTACA 105438 || || || || || |||| || | || ||| ||| | | ||| ||| Sbjct 40132 GGAGTACCAGTCTCGTTTTGAGACTCTATGATTTAACCCCAGAGCCATCTAGCCTTAACA 40073 Query 105439 ACTTTAGTTGCGA----TACCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTT 105494 || |||| |||| | ||| || | |||||| | |||||||| | Sbjct 40072 GTCTT----GCGACCTCTACCAGTGGTTTCATACTCGATGTAAAGTTTCTCAAACTCCTC 40017 Query 105495 ACCGTACACGTCTGA--AAGACCCTTTGCCTG-ATCAGGACAAAACAATGACCAATTACC 105551 ||| || || | ||| || | || | || ||||| | | | ||||| | Sbjct 40016 ACCC--CATGTAGTAGTAAGTCC-TGGGCATTCATTTGGACACATGAGAGTCCAATCTTC 39960 Query 105552 ATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCG 105611 || | |||||| | | ||||||| | ||||||| |||| | || | || ||||||| Sbjct 39959 ATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAGAAAAGGTCTCT 39900 Query 105612 ACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGC 105671 | || |||||| | ||| |||||| | | || || || ||| ||||| || Sbjct 39899 AGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAAGTCGTAGATATCAGC 39840 Query 105672 GTGCCATGGTTCTAAATAGACTGCAATAG-ACCCTT--TACGACGCCCCGCTTGATTGAC 105728 |||||||||||| | |||||| || | || ||||| | | || ||| || || Sbjct 39839 GTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCACCTTAATCCAC 39780 Query 105729 ATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATT 105788 ||||||||||| || | || |||||||||||| | |||| || ||| || Sbjct 39779 GTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGAATCAATCCATTTGAATATCCGTT 39720 Query 105789 TGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAAC-CCAATACCCC 105847 ||| || | || | || | | || | ||||||| || || || || ||||| | Sbjct 39719 TGTACCTCTGATGTAGGAGTCAGCAGCTCTTACATCG-GACACTGAGACTCCGATACCAC 39661 Query 105848 CAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTAT 105907 |||| ||| |||| ||| | ||||| || || ||||||| || || | Sbjct 39660 CAGCAGCCTTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAAATACCATCAATGGAGT 39601 Query 105908 CTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGA 105967 |||| || | | || ||| || || ||| | ||| | ||||| |||| || | Sbjct 39600 CTTCTTTTACAGTTAGCAAGAAGCAAGAACTCATCTAAGGTTTTGGTGTTCCAGAGTTAA 39541 Query 105968 ACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGA 106027 |||||||||| || |||||| | ||| | || | | ||||| || || | | Sbjct 39540 ACAGAGTTGGAGTGGCATGAGTAAACCACAGTTGACTCATCAAATCGTAAGTCTC--GAA 39483 Query 106028 CG-TGA-TCAATATCGTGTCCATGAATACCAATAGCGACGCGCATATAGAGATATTGGGG 106085 || ||| |||| || | | ||||||||||||| || | |||| | | || || Sbjct 39482 CGCTGACTCAAGGTCTTCTTTATGAATACCAATACTTACTCTCATAAGCATGTGCTGTGG 39423 Query 106086 TGTTTCAATAATTTCACCGTCAATTTTCTGGAGATACCCTTTTTCAAGTGTTTTTAAACC 106145 | | |||| |||| | || ||| | || || || |||| | |||| | ||||| Sbjct 39422 TCTCTCAAGGATTTGGTTGCCATCTTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACC 39363 Query 106146 AAAATA 106151 |||||| Sbjct 39362 AAAATA 39357 >seq259 Length=203576 Score = 89.7 bits (98), Expect = 7e-13 Identities = 245/370 (66%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 184022 GGCCAGAAATAATGAATCATGTTAAGAATAAGTCCCTTGATATGACTTCCATCGTTATCT 184081 |||||||| | ||| || | ||| | |||||||||||||||||| |||||| | |||| Sbjct 72473 GGCCAGAAGTTATGTATAAAGTTTATGATAAGTCCCTTGATATGAGATCCATCATGATCT 72414 Query 184082 GCATCGGTCATGATCATGAGTCTTCCGTATCTGAGT-TCGGAGAGTGATGTATACACTTT 184140 ||| | ||| ||||| | ||| |||| | | || | | || ||| | | Sbjct 72413 TAATCTGCCATAATCATTATAGATCCATATCGCAATGTCTTAAGATCATC-ATATTATCT 72355 Query 184141 CCCTTGCTGAAGCCCCAAAATCTTTTTAAGATCATTAAACTCCTTGTTTTCGGTAAGTTG 184200 || | ||||| | ||||| ||| || | | ||||| ||| || || || Sbjct 72354 ACCCATATATAGCCCGAGTATCTTGATAATATTTTGGATCTCCTCGTTATCTAAAATTTA 72295 Query 184201 TTTTACACTCGCG-TCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAAT 184259 || | || ||| || | || || |||| || || || || ||||| || || Sbjct 72294 CTTCATAC-CGCAATCTCTTACATTTAATAATTTTCCTCTTAGTGGGAAAACTCCAAAAC 72236 Query 184260 GATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGG 184319 |||| | ||||||||| | |||||| ||||| || | |||||||||||| ||||| | Sbjct 72235 GATCTCTGCCAACAACTTACAGACCACTCATTGCTAGAGATTTTGCAGAATCTCCTTCAG 72176 Query 184320 TAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTT 184379 | | |||||| | || |||| | | ||||| || ||| ||||| || |||| Sbjct 72175 TTAAAATAAGTATGCATGATTCAGACTCAGAAGTACCAGCCAAATTTGCATCTTCAAGTT 72116 Query 184380 TTGGAATACC 184389 | ||||| || Sbjct 72115 TAGGAATGCC 72106 >seq265 Length=174351 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 131783 GATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGG 131842 |||| |||||||||| ||||||||||||||| ||||||| ||||| || ||| ||| || Sbjct 59891 GATGACGTGGCCGAGCGGTCTAAGGCGCCAGCTTAAGGCGCTGGTCCGAAAGGGCGTGGG 59950 Query 131843 TTCAAATCCTGTCGGCATCA 131862 ||||||||| || ||||| Sbjct 59951 TTCAAATCCCACCGTCATCA 59970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634928604804800