Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1748 205 1e-47 seq17288 122 1e-22 >seq1748 Length=94692 Score = 205 bits (226), Expect = 1e-47 Identities = 750/1147 (65%), Gaps = 57/1147 (5%) Strand=Plus/Plus Query 111528 AGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCT-ACCTCC--AA 111584 ||||||||| ||| || ||||||||| ||| || | || || |||| |||| | || Sbjct 39339 AGAGACTACAACTATGACTATTTTGGTTTCAGAACATTGGA-AAGAGCTTACCTTCTTAA 39397 Query 111585 AGACTGG--ATGGTGTC-TTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATC 111641 ||| ||| | || |||| || |||||| ||||| | ||| | || || Sbjct 39398 AGA-TGGCAACCAAATCCTTGAGAGA----CCACAGCACATGCTTATGAGAGTAAGTATT 39452 Query 111642 GGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATG--TC--CCG 111697 ||||| ||| ||||| |||| || | || ||||| ||||| |||| || | | Sbjct 39453 GGTATTCATAAAGAAGACCTTGAGTCAGCGTTCGAGACTTACGATTTGATGAGTCAACTG 39512 Query 111698 TGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAAT 111757 |||| | |||| || || ||||| || || ||| |||| ||||||| ||| | || Sbjct 39513 TGGTTTACTCAT----GCCACTCCAACTCTGTTTAACTCTGGAACACCAAAACCTTAGAT 39568 Query 111758 GTCCAGTTGTTTCCTTATTGCAAAC----AAGGAGGATTCAATCAATGGCATTTACGGCA 111813 | |||| || | || |||| ||| || || || || || |||| |||| | | Sbjct 39569 G---AGTTCTTGC-TTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATTTTTGAAA 39624 Query 111814 CTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACA---TCC 111870 || | | || ||| ||||||||| |||||||||||||| | | || ||| Sbjct 39625 CTTTAAAATAAATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGT-CTCAGTGTCC 39683 Query 111871 ATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTA 111930 ||||| ||||| | || || ||||||||||| || | ||| |||| | | Sbjct 39684 --GATGTAAGAGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGA 39741 Query 111931 TTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC--- 111987 |||||||| | || || || | ||| || | || || | ||| ||| | Sbjct 39742 TTCCAATGTTAAAGGTTTTCAATGACACCGCAAGATACGTGGATTAAGGTGGTGGAAAAA 39801 Query 111988 GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTG 112047 | |||||| || |||| |||||| |||| ||||||||||| |||||| || |||||| Sbjct 39802 GAAAGGGAGCTTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTT 39861 Query 112048 AGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCT 112107 | | | || || ||| | || ||| | | || || |||| |||||| | Sbjct 39862 AACTCAGAAAGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTT 39921 Query 112108 GGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTC 112167 ||| ||||||||| ||||||| |||||||| | | || ||||| ||||| | |||| Sbjct 39922 GGACTCCAGATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTCATGTGTC 39981 Query 112168 CAGA-CAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || | || || || || || | | | ||||||||||||||| || |||| Sbjct 39982 CAAATGAATGC-CCAGGACTTACTACTACATGGGGTGAGGAGTTTGAGAAACTTTACATC 40040 Query 112227 AAGTACGA-------GGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTG 112279 |||| || || || | |||| ||||| | | || || || | | || | Sbjct 40041 GAGTATGAAACCACTGGTAG-AGGTCGCAAGACTGTTAAG--GCTAGATG--GCTCTGGG 40095 Query 112280 GAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGC 112339 | | || | ||||||||| |||||||||||| || ||||||||||||||||| || Sbjct 40096 GTTA--AATCATAGAGTCTCAAAACGAGACTGGTACTCCTTATATGCTTTACAAAGATGC 40153 Query 112340 CTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTAC 112399 || || ||| || | | ||| | || || |||||||| ||||| || || Sbjct 40154 TTGCAATAGAAAATCCAACTAGTAAAATCTTGGCACAATTAAGAGTTCTAACCTTTGCAC 40213 Query 112400 AGAAATCTTGGAATTTA-CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCG 112458 || ||| | ||||||| ||| | |||||| |||||| ||||| || || || || | Sbjct 40214 TGAGATCGTCGAATTTACCAGTC-CAGATGAAGTGGCTGTCTGTAATCTAGCTTCTATTG 40272 Query 112459 CTCTCCCCAAGTATGTGGATCCAGAGA-CAAAGACATTTGATTATGAAAAACTCCACGAA 112517 || | | | ||| || | | |||| || ||||||||| || | || | Sbjct 40273 CTTTAAATAGATTCGTGTTAAAGGAAACCTAAGA-ATATGATTATGAGAAGTTACATTAC 40331 Query 112518 GTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT 112577 || || || | | || || || ||||| | | |||| |||| |||| || || ||| Sbjct 40332 GTGACCAAGAGAATTACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCTGTT 40391 Query 112578 GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTC 112637 ||| | || || ||| | |||||| | |||||||| | |||||| |||| | Sbjct 40392 CCTGAAGCTAGAAATTCAAATCTTAGACACAGACCAATTGGAATTGGTGTCTAAGGATTT 40451 Query 112638 GCGGATG 112644 || |||| Sbjct 40452 GCAGATG 40458 >seq17288 Length=143976 Score = 122 bits (134), Expect = 1e-22 Identities = 184/255 (72%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATC-CAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 |||||| || ||||| |||||||| | |||| | ||| | | ||||| || || Sbjct 116728 GAGAAGGAGTTCCTCTTCAAAGCCATCACTAACA-TCCCAGTTGTAACTAAGAAGGCTGA 116786 Query 102137 TTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 102196 ||||| || |||||| ||| | | || ||| | ||| |||||| |||| | || || Sbjct 116787 ATGGGCCATTAAGTGGATTGGTG-AGAG-CGC-TAGCTTCGCTGAGAGACTAATTGCTTT 116843 Query 102197 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 102256 || | | ||||| ||||||||||| || ||||||||| | || | ||||| ||||| Sbjct 116844 CGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGAA 116903 Query 102257 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316 ||| || ||||||||||||||| |||||| || ||||| || || | ||||| || | Sbjct 116904 GCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGGTAT 116963 Query 102317 CCACCAAGAGTTTGC 102331 ||| || ||||| Sbjct 116964 GCACACTGACTTTGC 116978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620542831318400