Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1748 84.2 3e-11 seq17288 82.4 9e-11 >seq1748 Length=94692 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/275 (67%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 110578 GGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 ||||| | ||| | ||||| | || | ||||| || ||||||| || || ||| || Sbjct 39982 GGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTC 39923 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 || | || |||||||||| | | | |||||| | ||| || || | || Sbjct 39922 CAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGT 39863 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 | | ||||| |||||| | |||||||||||| | ||||||||||| | |||||| Sbjct 39862 TAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTT 39803 Query 110758 C---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 | | ||| | | | || || | ||| ||| ||||||| ||| | | ||| ||| Sbjct 39802 CTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGA 39743 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 || | ||||| || | || |||||||| || || Sbjct 39742 ATCAATCCATTTGAATATCCGTTTGTACCTCTGAT 39708 >seq17288 Length=143976 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || | || ||||||||||| |||| || || |||||||| || | ||| Sbjct 116960 CCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTTC 116901 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||| | || || ||| || |||||||||||||| | | |||||| Sbjct 116900 TTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAGCAGCGAAA 116841 Query 119634 GCGAATAGACGCTCAGCAAA 119653 || | ||| | |||||| || Sbjct 116840 GCAATTAGTCTCTCAGCGAA 116821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588786644216000