Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1748 131 2e-25 seq17288 107 2e-18 >seq1748 Length=94692 Score = 131 bits (144), Expect = 2e-25 Identities = 419/639 (66%), Gaps = 26/639 (4%) Strand=Plus/Minus Query 106709 TCAAACTCCTCACCCACCGCGTCGGAG--AGACCTGGTGCCTTG-TCTGGACAGAAAAGA 106765 ||||||||||||||| | || | || || ||||| || || | |||||| | ||| Sbjct 40027 TCAAACTCCTCACCC--CATGTAGTAGTAAGTCCTGG-GCATTCATTTGGACACATGAGA 39971 Query 106766 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 106825 | ||| | || | ||||| | |||||||||| |||||| |||| || | | Sbjct 39970 GTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAG 39911 Query 106826 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 106885 || || |||||| | | |||||| | ||| || || || | | |||||| || Sbjct 39910 AAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAAGTCG 39851 Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCA 106942 |||||| ||||||||||| |||| |||||| |||| || |||||||| | ||| Sbjct 39850 TAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCA 39791 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 ||| || || || | || ||| | || || || | ||||||||| | |||| | Sbjct 39790 CCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGAATCAATCCATTT 39731 Query 107003 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA---TGTGC 107059 || | || ||||| || | || || | | ||||| ||||| ||| || | Sbjct 39730 GAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTACATC--GGACACTGAG- 39674 Query 107060 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 107119 | || ||||| ||||| ||||||||| ||| | | | |||| || | ||| Sbjct 39673 ACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAAATA 39614 Query 107120 CCGTTGATTGAGTCCTCCTT----GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 || | || ||||| || || ||| || | ||| ||| |||| ||||| ||| | Sbjct 39613 CCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAG-AACT---CATCTAAGGTTT 39558 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 107235 |||||| |||| || || || ||||| || || ||| | ||| ||| |||| Sbjct 39557 TGGTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACCACAGTTGACTCATCAA 39498 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 ||||| ||||| || | || |||| |||||| || || || || || | ||| Sbjct 39497 ATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACCAATACTTACTCTCAT 39438 Query 107296 AAACATGTATTGGGGTGTTTCCATGA---GGATGCCATC 107331 || ||||| || ||| | || | || || ||||||| Sbjct 39437 AAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTGCCATC 39399 >seq17288 Length=143976 Score = 107 bits (118), Expect = 2e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| || |||| ||||| || |||||||||||| || ||| Sbjct 116978 GCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCT 116919 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 116918 GGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATG 116859 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG-GAGCGAGACTTTGTGTCAAA 117452 ||||| | | || || |||| || | ||| |||||| |||| || | ||| Sbjct 116858 CCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCG---CTCT-CACCAAT 116803 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTT 117479 ||| || || ||||||| |||||||| Sbjct 116802 CCACTTAATGGCCCATTCAGCCTTCTT 116776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589791121172800