Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq17929 98.7 1e-15 seq1642 98.7 1e-15 >seq17929 Length=58242 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 153215 AGGATACTATGGAACCATTACACCCCCAGTCATA-CAGC-GAAACGTTCTTGAGAATCCT 153272 ||| |||||| ||| | ||||||||||| || ||| | || |||||||| ||||| Sbjct 48094 AGGTTACTATCCAACTA--ACACCCCCAGTGTTATCAGAAGGAATGTTCTTGAAAATCCA 48151 Query 153273 AGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCT 153332 | ||||||||| ||||||| ||||||||||||||||| |||| || ||| | ||| | Sbjct 48152 AACTGGTACACACCTTACACCCCCTATCAAGCTGAGATCGCTCAAGGTAGACTAGAATCC 48211 Query 153333 TTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCT 153392 |||| || | | |||| | | || || | || | | | |||| || ||| Sbjct 48212 CTATTAAACTTCTAAACTATGGTGACTGAGTTAACCAAACTCGACGTCTCAAATGCTTCT 48271 Query 153393 CTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATATAA 153442 || || ||||| || ||| |||| || || | ||| | | |||||||| Sbjct 48272 CTCTTGGATGAGGCTACTTCAGCTGCTGAGACTATGTTTATGGCATATAA 48321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 153837 AAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAAGCA 153896 ||||||||||| || || | || | ||| ||| | ||| | ||| | ||||| Sbjct 49170 AAGAGAAAGATGCCAGGTCGTCTTATCGGTGTCTCAATTGATGCCCAGGGTGACAAAGCT 49229 Query 153897 TACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAAC 153956 |||||| | || || || || ||||| ||||||||||| |||||||| |||||| ||| Sbjct 49230 TACAGAATGGCTCTCCAAACCAGAGAACAGCATATCAGAAGAGACAAGGCAACCTCAAAC 49289 Query 153957 ATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTG 153993 || ||||| ||||| || || || ||||| || |||| Sbjct 49290 ATTTGCACTGCTCAAGCCCTTCTTGCTAACATTTCTG 49326 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 155367 GATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGTG 155426 |||||||| ||||||||||||||||||||||||||||||||||| |||| | || || Sbjct 51154 GATATAGCTAAGAGACTTATGGACTATGGATTCCATGCACCTACTGTATCTTTCCCAGTT 51213 Query 155427 TTAGGAACTATGATGGTAGAACCCACAGAGTCTGA 155461 |||| | | ||| | || || || |||||||| Sbjct 51214 GCTGGAAGTCTCATGATTGAGCCAACTGAGTCTGA 51248 >seq1642 Length=60753 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 153837 AAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAAGCA 153896 ||||||||||| || || | || | ||| ||| | ||| | ||| | ||||| Sbjct 59716 AAGAGAAAGATGCCAGGTCGTCTTATCGGTGTCTCAATTGATGCCCAGGGTGACAAAGCT 59657 Query 153897 TACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAAC 153956 |||||| | || || || || ||||| ||||||||||| |||||||| |||||| ||| Sbjct 59656 TACAGAATGGCTCTCCAAACCAGAGAACAGCATATCAGAAGAGACAAGGCAACCTCAAAC 59597 Query 153957 ATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTG 153993 || ||||| ||||| || || || ||||| || |||| Sbjct 59596 ATTTGCACTGCTCAAGCCCTTCTTGCTAACATTTCTG 59560 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 153255 AACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCT 153314 || |||||||| ||||| | ||||||||| ||||||| ||||||||||||||||| || Sbjct 60752 AATGTTCTTGAAAATCCAAACTGGTACACACCTTACACCCCCTATCAAGCTGAGATCGCT 60693 Query 153315 CAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTA 153374 || || ||| | ||| | |||| || | | |||| | | || || | || | | Sbjct 60692 CAAGGTAGACTAGAATCCCTATTAAACTTCTAAACTATGGTGACTGAGTTAACCAAACTC 60633 Query 153375 CCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTA 153434 | |||| || ||||| || ||||| || ||| |||| || || | ||| | | Sbjct 60632 GACGTCTCAAATGCTTCTCTCTTGGATGAGGCTACTTCAGCTGCTGAGACTATGTTTATG 60573 Query 153435 GCATATAA 153442 |||||||| Sbjct 60572 GCATATAA 60565 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 155367 GATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGTG 155426 |||||||| ||||||||||||||||||||||||||||||||||| |||| | || || Sbjct 57732 GATATAGCTAAGAGACTTATGGACTATGGATTCCATGCACCTACTGTATCTTTCCCAGTT 57673 Query 155427 TTAGGAACTATGATGGTAGAACCCACAGAGTCTGA 155461 |||| | | ||| | || || || |||||||| Sbjct 57672 GCTGGAAGTCTCATGATTGAGCCAACTGAGTCTGA 57638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579026583084800