Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq17929 107 2e-18 seq1642 107 2e-18 >seq17929 Length=58242 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 158512 AAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCA 158571 ||||||||||| || || | || | ||| ||| | ||| | | ||| | ||||| Sbjct 49170 AAGAGAAAGATGCCAGGTCGTCTTATCGGTGTCTCAATTGATGCCCAGGGTGACAAAGCT 49229 Query 158572 TACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAAC 158631 |||||| | || || || || ||||| |||||||||||||||||||| |||||| ||| Sbjct 49230 TACAGAATGGCTCTCCAAACCAGAGAACAGCATATCAGAAGAGACAAGGCAACCTCAAAC 49289 Query 158632 ATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668 || ||||| || ||||| || || ||||| || |||| Sbjct 49290 ATTTGCACTGCTCAAGCCCTTCTTGCTAACATTTCTG 49326 Score = 105 bits (116), Expect = 8e-18 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 157890 AGGATACTATGGAACCATCACACCCCCAGTCATA-CAGC-GAAACGTTCTTGAGAATCCT 157947 ||| |||||| ||| | ||||||||||| || ||| | || |||||||| ||||| Sbjct 48094 AGGTTACTATCCAACTA--ACACCCCCAGTGTTATCAGAAGGAATGTTCTTGAAAATCCA 48151 Query 157948 AGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCT 158007 | ||||||||| ||||||| ||||||||||||||||| |||| || ||| | ||| | Sbjct 48152 AACTGGTACACACCTTACACCCCCTATCAAGCTGAGATCGCTCAAGGTAGACTAGAATCC 48211 Query 158008 TTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA--TAGCAAACGCAT 158065 |||| || | | |||| | | || || | || ||| ||| | |||| || | Sbjct 48212 CTATTAAACTTCTAAACTATGGTGACTGAGTTAACCAAACT--CGACGTCTCAAATGCTT 48269 Query 158066 CTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATATAA 158117 |||| || ||||| || ||| |||| || || | ||| | | |||||||| Sbjct 48270 CTCTCTTGGATGAGGCTACTTCAGCTGCTGAGACTATGTTTATGGCATATAA 48321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 160042 GATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGTG 160101 |||||||| ||||||||||||||||||||||||||||||||||| |||| | || || Sbjct 51154 GATATAGCTAAGAGACTTATGGACTATGGATTCCATGCACCTACTGTATCTTTCCCAGTT 51213 Query 160102 TTAGGAACTATGATGGTAGAACCAACAGAGTCTGAGTCACTTGA-TGAGTTGCAAAGATT 160160 |||| | | ||| | || ||||| |||||||| || || |||| || | ||||| Sbjct 51214 GCTGGAAGTCTCATGATTGAGCCAACTGAGTCTGA-AGACAAGATTGAGATGGACAGATT 51272 Query 160161 TGTTGATGCTATGGATAAAATAAAAAGAGAGAT 160193 | ||||| ||| | | ||| | | |||||| Sbjct 51273 CATCGATGCCATGAAGAGAATTAGAGAAGAGAT 51305 >seq1642 Length=60753 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 158512 AAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCA 158571 ||||||||||| || || | || | ||| ||| | ||| | | ||| | ||||| Sbjct 59716 AAGAGAAAGATGCCAGGTCGTCTTATCGGTGTCTCAATTGATGCCCAGGGTGACAAAGCT 59657 Query 158572 TACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAAC 158631 |||||| | || || || || ||||| |||||||||||||||||||| |||||| ||| Sbjct 59656 TACAGAATGGCTCTCCAAACCAGAGAACAGCATATCAGAAGAGACAAGGCAACCTCAAAC 59597 Query 158632 ATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668 || ||||| || ||||| || || ||||| || |||| Sbjct 59596 ATTTGCACTGCTCAAGCCCTTCTTGCTAACATTTCTG 59560 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 160042 GATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGTG 160101 |||||||| ||||||||||||||||||||||||||||||||||| |||| | || || Sbjct 57732 GATATAGCTAAGAGACTTATGGACTATGGATTCCATGCACCTACTGTATCTTTCCCAGTT 57673 Query 160102 TTAGGAACTATGATGGTAGAACCAACAGAGTCTGAGTCACTTGA-TGAGTTGCAAAGATT 160160 |||| | | ||| | || ||||| |||||||| || || |||| || | ||||| Sbjct 57672 GCTGGAAGTCTCATGATTGAGCCAACTGAGTCTGA-AGACAAGATTGAGATGGACAGATT 57614 Query 160161 TGTTGATGCTATGGATAAAATAAAAAGAGAGAT 160193 | ||||| ||| | | ||| | | |||||| Sbjct 57613 CATCGATGCCATGAAGAGAATTAGAGAAGAGAT 57581 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 157930 AACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCT 157989 || |||||||| ||||| | ||||||||| ||||||| ||||||||||||||||| || Sbjct 60752 AATGTTCTTGAAAATCCAAACTGGTACACACCTTACACCCCCTATCAAGCTGAGATCGCT 60693 Query 157990 CAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTA 158049 || || ||| | ||| | |||| || | | |||| | | || || | || ||| Sbjct 60692 CAAGGTAGACTAGAATCCCTATTAAACTTCTAAACTATGGTGACTGAGTTAACCAAACT- 60634 Query 158050 CCGA--TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGT 158107 ||| | |||| || ||||| || ||||| || ||| |||| || || | ||| | Sbjct 60633 -CGACGTCTCAAATGCTTCTCTCTTGGATGAGGCTACTTCAGCTGCTGAGACTATGTTTA 60575 Query 158108 TAGCATATAA 158117 | |||||||| Sbjct 60574 TGGCATATAA 60565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587862141539200