Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq18779 152 1e-31 seq20086 150 4e-31 seq10467 150 4e-31 seq6376 150 4e-31 seq5238 150 4e-31 seq1293 150 4e-31 seq2143 143 6e-29 seq17194 114 3e-20 seq3525 104 5e-17 >seq18779 Length=42783 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| ||||| | || | ||| ||||| ||||| ||||| || ||||| |||| |||| | Sbjct 13361 TCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAG-G 13303 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| || |||||||| ||||||||||||| |||||| || || || || | Sbjct 13302 TTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATAC 13243 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||| | || || ||| ||||| ||||||||||| || || || || | Sbjct 13242 CTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGA 13183 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| | |||||||| || | || || ||||| | |||||| Sbjct 13182 GGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 13140 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | || | |||||| || ||||| ||||| || ||||| || ||| || Sbjct 13133 TCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGT 13074 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || ||||| || || || || |||| |||||| || || || || || Sbjct 13073 TCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACC 13014 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || ||| |||||| ||||||||||| || ||| || || || | Sbjct 13013 TTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAA 12954 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | || || ||||| | |||||| Sbjct 12953 GGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 >seq20086 Length=32257 Score = 150 bits (166), Expect = 4e-31 Identities = 159/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| ||||| || |||||||| || |||||||| | |||| ||||| || ||||| | || Sbjct 22175 GTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTCTTCCAACT 22117 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| || || ||||| |||| ||||| || || ||||| ||||||||||||||||| | Sbjct 22116 ACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCT 22057 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| ||||| || ||||| || ||| || || ||||| |||| ||||| || | Sbjct 22056 TGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGG 21997 Query 195116 TCAAAGTTTTTACGAACACTTGCATTT 195142 ||||||| || ||||| | | ||||| Sbjct 21996 TCAAAGTCTTGACGAAGATCTACATTT 21970 >seq10467 Length=17661 Score = 150 bits (166), Expect = 4e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATC 194987 || || | ||| ||||| || |||||||| || |||||||| | |||| ||||| || || Sbjct 3822 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTC 3764 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||| || || ||||| |||| ||||| || || ||||| ||||||||||| Sbjct 3763 TTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC 3704 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||| ||||| || ||||| || ||| || || ||||| |||| || Sbjct 3703 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 3644 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || |||||||| || ||||| | | ||||| Sbjct 3643 CTTACCGGTCAAAGTCTTGACGAAGATCTACATTT 3609 Score = 150 bits (166), Expect = 4e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATC 194987 || || | ||| ||||| || |||||||| || |||||||| | |||| ||||| || || Sbjct 13832 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTC 13890 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||| || || ||||| |||| ||||| || || ||||| ||||||||||| Sbjct 13891 TTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC 13950 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||| ||||| || ||||| || ||| || || ||||| |||| || Sbjct 13951 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 14010 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || |||||||| || ||||| | | ||||| Sbjct 14011 CTTACCGGTCAAAGTCTTGACGAAGATCTACATTT 14045 >seq6376 Length=13110 Score = 150 bits (166), Expect = 4e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATC 194987 || || | ||| ||||| || |||||||| || |||||||| | |||| ||||| || || Sbjct 12220 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTC 12162 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||| || || ||||| |||| ||||| || || ||||| ||||||||||| Sbjct 12161 TTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC 12102 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||| ||||| || ||||| || ||| || || ||||| |||| || Sbjct 12101 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 12042 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || |||||||| || ||||| | | ||||| Sbjct 12041 CTTACCGGTCAAAGTCTTGACGAAGATCTACATTT 12007 >seq5238 Length=45295 Score = 150 bits (166), Expect = 4e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATC 194987 || || | ||| ||||| || |||||||| || |||||||| | |||| ||||| || || Sbjct 22031 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTC 21973 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||| || || ||||| |||| ||||| || || ||||| ||||||||||| Sbjct 21972 TTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC 21913 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||| ||||| || ||||| || ||| || || ||||| |||| || Sbjct 21912 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 21853 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || |||||||| || ||||| | | ||||| Sbjct 21852 CTTACCGGTCAAAGTCTTGACGAAGATCTACATTT 21818 >seq1293 Length=7053 Score = 150 bits (166), Expect = 4e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATC 194987 || || | ||| ||||| || |||||||| || |||||||| | |||| ||||| || || Sbjct 6509 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTC 6451 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||| || || ||||| |||| ||||| || || ||||| ||||||||||| Sbjct 6450 TTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC 6391 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||| ||||| || ||||| || ||| || || ||||| |||| || Sbjct 6390 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 6331 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || |||||||| || ||||| | | ||||| Sbjct 6330 CTTACCGGTCAAAGTCTTGACGAAGATCTACATTT 6296 >seq2143 Length=26640 Score = 143 bits (158), Expect = 6e-29 Identities = 168/223 (75%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| ||||| | || | ||| ||||| ||||| ||||| || ||||| |||| |||| | Sbjct 5790 TCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAG-G 5848 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| || |||||||| ||||||||||||| |||||| || || || || | Sbjct 5849 TTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATAC 5908 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||| | || || ||| ||||| ||||||||||| || || || || | Sbjct 5909 CTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGA 5968 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | || || ||||| | |||||| Sbjct 5969 -GGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 6010 >seq17194 Length=120762 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||||||| || | |||||| || ||||| || || || ||||| |||| || || Sbjct 44567 TCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 44626 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | ||| || || ||||| || |||| ||||| || || || || || Sbjct 44627 TCTGCCGTCTTCCAACTGTTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGGATTCC 44686 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 ||||||||||| || || |||||| || ||||| Sbjct 44687 CTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAAT 44722 >seq3525 Length=54936 Score = 104 bits (114), Expect = 5e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | ||| | || || || |||||| ||| ||||||||| || | | || Sbjct 24168 TCTGAGTCTAAGAACTAAATGGAGTGTTGACTCTGTTTAAATATTGTAGTCTCCCAATGT 24109 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || || | | | ||||||| || || | || ||||||||| ||||||||||| Sbjct 24108 CCTTCCGTCCTCTAATTACATACCTGCAAATATTAATCTTTGTTGGTCAGGAGGAATGCC 24049 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| |||| |||||| |||| | | |||||||| || Sbjct 24048 CTCTTTATCTTAAATTTTAAGCTTAAATTCTTCAATGGTCTC 24007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109115984207240