Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1748 203 4e-47 seq17288 113 5e-20 >seq1748 Length=94692 Score = 203 bits (224), Expect = 4e-47 Identities = 724/1116 (65%), Gaps = 32/1116 (3%) Strand=Plus/Minus Query 47702 ATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGC 47761 |||||| ||||||| |||||||| ||||||||||| || | ||| ||| ||| Sbjct 40457 ATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTAGC 40398 Query 47762 TTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNN 47821 ||| || | ||||| | || |||||||||||||||||||| Sbjct 40397 TTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCTCTT 40338 Query 47822 NACAATTTCTCTTAATTTATTAAAATCAAA--CTT--GTTATTTATAACA--AACCTATT 47875 | | ||| || | | ||||| | ||| ||| | ||||| || ||||| Sbjct 40337 GGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCTATT 40278 Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 | || ||||| ||||||||||| ||||| || |||| |||| | ||| ||| | || Sbjct 40277 TAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGACGAT 40218 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG 47993 |||| || || ||| || || || || || | ||||| | || ||| | Sbjct 40217 CTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTC--TA 40160 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 || || || || |||||||||||| |||| || ||||| || | ||||| || ||||| Sbjct 40159 TTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATT 40100 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTAT-TATCA-TG--TTCGTA 48109 | ||| | |||||||| ||||| ||| || | || || || ||| || Sbjct 40099 TAACCCCAGAGCCATCTAGCCTT---AACAG-TCTTGCGACCTCTACCAGTGGTTTCATA 40044 Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169 | | || | |||||||| || || || | | || | || || |||||||| Sbjct 40043 CTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATT 39984 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 |||||||| | | |||||| |||| || ||||| |||| || | |||||| | Sbjct 39983 TGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGT 39924 Query 48230 CCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 ||||||||| || ||| | || |||| ||| ||||| || || |||| || | | Sbjct 39923 CCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGA 39865 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 ||| ||| ||||| |||||||| ||||||||||| | ||| | || | | || Sbjct 39864 GTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCT 39805 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408 || ||| ||| |||| ||| | ||||| || || | || |||| ||||||||| Sbjct 39804 TTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTG 39745 Query 48409 GGA-CAATACCATTTG-ATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT 48466 | | |||| ||||||| |||| || || || || || || || |||||||| Sbjct 39744 GAATCAAT-CCATTTGAATAT-CCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTAC 39687 Query 48467 ATTACTAATTGAAATACCTATACCACCTGC--CATTTTAGATATTAGAGCACACCGTTTA 48524 || | ||| | || |||||||| || | ||| ||||| | |||| ||| Sbjct 39686 ATCGGACACTGAGACTCCGATACCACCAGCAGCCTTTGAGATA--ATAGCAATTTATTTT 39629 Query 48525 AGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGAC 48584 | || ||| |||| || || || || ||| | | | ||| | || ||| | | Sbjct 39628 AAAGTTTCAAAAATACCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAGAACTC 39569 Query 48585 ATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC--CATT 48642 || | || | ||||| || ||||| | ||||||| |||||| ||||| || | Sbjct 39568 ATCTAAGGTTTTGGTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACCACAGT 39509 Query 48643 TCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTA 48702 | || || ||| | || || || | | || || | || || ||| ||||| | Sbjct 39508 TGACTCAT--CAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACCAA 39451 Query 48703 TAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAA 48762 || ||| | ||| | ||| | || ||||| |||| |||| ||| ||| | || Sbjct 39450 TACTTACTCTCATAAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTGCCATCTTTAAGAA 39391 Query 48763 GATATGATTTTTCCAATGTTTTAAAACCAAAATAGT 48798 | || | | ||||||||||| | ||||||||||||| Sbjct 39390 GGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 39355 >seq17288 Length=143976 Score = 113 bits (124), Expect = 5e-20 Identities = 404/621 (65%), Gaps = 17/621 (3%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||| || | || |||||||| || | ||||| || || || | | Sbjct 116981 CAAGCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGA 116922 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAA 19079 || ||||| || || | || || | |||||| || || ||| || ||||| || ||||| Sbjct 116921 CCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAA 116863 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || || || | || || ||||||| |||||| || | | ||||| | | | Sbjct 116862 GATGCCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGC---TCTCACC 116806 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| || | ||||| ||||||||||| ||||| ||| || | || | || Sbjct 116805 AATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTT 116746 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA--ACTG--T 19255 || || || ||| | || || || ||| | || || | |||| | Sbjct 116745 GAAGAGGAACTCCTTCTCGTGTGGGTC----ACTGATGAGGGTGTCGATGAGTACTGAGT 116690 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 | | ||||| ||||| || || || ||| || || || || ||||| | |||||||| Sbjct 116689 AAGTCTCTGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTG 116630 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | || | |||| |||| ||||| | | | | || || || || ||||| || | Sbjct 116629 GAACTTGGATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGG 116570 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA-TGTATTC 19434 | || ||||| || | || || || ||||| ||| | || | || ||| | | | | | Sbjct 116569 CAGCGAAAAAGGCAAGGACGTGCTTGATAAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCC 116511 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC-TCTGC 19493 ||||| |||| || | | | || | ||| ||| ||||| |||| |||| |||| Sbjct 116510 CAATCCTTAACGTCGGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTGG 116451 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTT 19553 | || ||||| ||||| || || || | || |||| ||||||||||| ||| Sbjct 116450 TCCTTG-TACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGG 116392 Query 19554 ATTTTCTTTAAGAATAGGTTC 19574 || |||| |||| ||| || Sbjct 116391 GTTATCTTCGAGAAGAGGCTC 116371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561928082020800