Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq92 176 4e-38 seq19259 150 1e-30 seq18779 114 1e-19 seq979 109 4e-18 seq259 105 5e-17 seq2143 102 7e-16 seq17102 93.3 3e-13 seq234 91.5 1e-12 >seq92 Length=278201 Score = 176 bits (194), Expect = 4e-38 Identities = 361/530 (68%), Gaps = 9/530 (2%) Strand=Plus/Minus Query 368584 GATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGAT 368643 ||||||||| | ||||||| ||| | |||||| | ||||| || | ||| ||||| Sbjct 255916 GATTGGTGTTTCTCAAGAAATAGATATTGGGGTAACCCAATCCCTATCTGGGTTTCTGAA 255857 Query 368644 GATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGT-GT 368702 || ||||||||||| ||| | ||||||||||||||| | ||||| |||| ||| || Sbjct 255856 GACATGGAAGAAATTGTATGTGTTGGTTCAATTAAAGAACTTTAAGAACTATCAGGTTGT 255797 Query 368703 GCAAAATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCAAAGAA 368762 | | || || | |||| | |||| || | |||||||| |||| |||||||||||| | Sbjct 255796 GGAGAA-ATCACTGATCTTCATAGAGAAAGTATTGATCATATTACCATTCCATCAAAGCA 255738 Query 368763 AGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTC 368822 ||||||||| | | || || || ||| || ||||||||||| || |||||||| Sbjct 255737 AGGAAAAGGAGTTCTTAAGAGAATTCCAGAAGTATTCGATTGCTGGTTCGAGTCAGGTTC 255678 Query 368823 TATGCCTTATGGTCAAATACATTATCCATT--TGATAACGCAAAATACTTTGATAATGAT 368880 |||||| | | | || | ||||||||||| || | || | || || ||| Sbjct 255677 TATGCCATTCGCTTAAGTTCATTATCCATTCAGCATGTCAGAAGAAACCTT--TAA--CC 255622 Query 368881 AAAGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTAT 368940 | ||||| ||| | ||| | | ||| |||| |||| | |||||||| ||| Sbjct 255621 AGAGATT-CCCAGCTAACTTTATTGCTGAAGGTCTTGACTAAACCAGAGGTTGGTTCTAT 255563 Query 368941 ACCCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTA 369000 || | | || | || || ||| | | | ||| | | || || ||| | || || Sbjct 255562 ACTTTGATGGTCATCTCAACCGCTGTCATGAAGAAAGCACCATTCAAGAATTTGATCGTT 255503 Query 369001 ACTGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAAAGTAAGGGTAATTATTCC 369060 | |||||||||| || | ||||| |||| |||||||| ||| ||||| | Sbjct 255502 AATGGTATTGTTTTAGCTCCAGATGGATAAAAAATGTCAAAGTCAAAGAAAAATTACCCA 255443 Query 369061 GATCCTAATATTTTAATTGATAAATTTGGTGCTGATACTTTGAGATTATA 369110 ||||| | || | | |||| || || |||||| ||| |||||||| Sbjct 255442 GATCCAATGCTTATGGCTCATAACTTCGGAGCTGATGCTTGCAGATTATA 255393 >seq19259 Length=46844 Score = 150 bits (166), Expect = 1e-30 Identities = 260/375 (69%), Gaps = 2/375 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || |||||||| |||||||| || ||||| || | ||||| |||||||| ||||| || Sbjct 32275 AACCCAGATGAAGCTGTTGCTTACGGTGCTGCCGTCCAAGCTGCTATTCTCACTGGAGAA 32334 Query 552270 ACTGATGAAAAACTACAAA-ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || | ||| ||| || | | ||| | |||||||| || || || ||| | Sbjct 32335 GGAGAC-AGCAACGTCAAGGATCTCCTCCTTTTGGATGTTACCCCACTCTCAACCGGTAT 32393 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 ||||| | ||||||| | |||||| ||| || ||||| ||||| || || || Sbjct 32394 TGAAACTGCTGGAGGTGTCATGACTGTTCTCATTCCAAGAAACACTACCATCCCAACCAA 32453 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 || || | | || | || ||| | || || ||| | | ||| |||||| | || Sbjct 32454 GAAGTCACAAATCTTCACCACCTATGCTGACAACCAACCAGGTGTCTTGATTCAAGTCTT 32513 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 ||||| |||||| | | || || ||||| | ||| |||| || || | ||||| Sbjct 32514 CGAAGGTGAAAGATCAATGACCAAGGATAACCACTTACTCGGTAAATTCAACCTTGAAGG 32573 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 ||| || || ||||| | || || || ||||| ||||| ||||||||||| |||||||| Sbjct 32574 TATCCCACCCGCTCCCAGAGGTGTCCCACAAATCGAAGTCACTTTCGATATTGATGCCAA 32633 Query 552569 TGGAATTTTGAATGT 552583 ||||| ||||| || Sbjct 32634 CGGAATCTTGAACGT 32648 Score = 123 bits (136), Expect = 2e-22 Identities = 390/591 (66%), Gaps = 15/591 (3%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || |||||| | || ||||| || ||| || ||||| |||| || | ||| Sbjct 31198 GCTATTGGAATAGATCTCGGCACCACTTACTCTTGCGTAGGTGTGTGGCTCAACGACAAA 31257 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||| || |||| |||||||| |||| || |||||||| || || ||||||| Sbjct 31258 GTTGAAATCATCCCCAACGATCAAGGAAACAACACCACTCCATCATACGTCGCTTTCACT 31317 Query 550112 GAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 ||| || | | ||| |||| || |||| || |||||| || | || || | || Sbjct 31318 GAAGAAGAGAGACTTA-TTGGAGACTCAGCCAAGAATCAAGTTGCTAGAAACCCCAAGAA 31376 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || | || || || || | | || ||||||| || ||| | |||| | Sbjct 31377 CACCGTCTTCGACGCCAAGAGACTTATCGGAAGAAAATTCTCTGAGAAGCAAATTCAAGA 31436 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATG---TTTCTGGAAAACCTTATATTGA 550287 || |||||||||||||| ||| | | | | | ||| || || |||| Sbjct 31437 CGACATGAAGCATTGGCCATTCAAGGTCGAGCAAGGACCAGCTGACAAGCCAGTCATTGT 31496 Query 550288 AG-CTACTCATGAAGGATCTGTTAAACAATTTTCAC-CAGAACAAATTTCATCTATGGTT 550345 | | ||| |||| | || || || ||| | ||| |||| ||||||||||| Sbjct 31497 TGTCGACT--ACAAGGGTGAAGCCAAGAAGTTCCACGCTGAAGAAATCTCATCTATGGTC 31554 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTC-AAGA-AGTTACGGATGCAG 550403 || || || ||||| ||| || |||| | || || |||| || | | | || | Sbjct 31555 TTGATCAAGATGAAGGAAATCGCTGAAGCTTATCTT--TCAAAGACTGTCAAGAACGCTG 31612 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || ||||| ||||| ||||| || |||||||| | ||||| || || |||||||| Sbjct 31613 TTATCACTGTCCCAGCTTATTTCAACGACTCACAGAGACAAGCCACCAAGGATGCTGGTA 31672 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 || | || | || ||||| | || ||||| || || |||||||| || |||| | Sbjct 31673 CCATCTCAGGTATGAACGTTCTCAGAATCATCAACGAGCCAACTGCTGCCGCTATTGCTT 31732 Query 550524 ATGGACTTGATAA-ACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 | || | || || | || || ||||| || || |||||||| ||| Sbjct 31733 ACGGTTTGGACAAGAAATCAT-CCCAAGAGAAAAACGTTCTCATCTTCGAT 31782 >seq18779 Length=42783 Score = 114 bits (126), Expect = 1e-19 Identities = 156/212 (74%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| |||||||| ||| ||||| || ||||| ||| || |||||| |||||| Sbjct 12890 CAAG-TGAAGGGTTGACTCCTTTTGG--ATGTTGTAGTCACTAAGGGTTCTTCCATCTTC 12834 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 |||||| ||||| |||||||| |||||||| ||||| || ||||| ||||| |||||||| Sbjct 12833 AAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTG 12774 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTT 563443 || || || || ||||| || || | || ||| || ||||| | || | Sbjct 12773 GATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACA-TCAAGAGTGATGGTCT 12715 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || || || ||||| ||||||||| Sbjct 12714 TTCCAGTGAGGGTCTTCACGAAGATTTGCATA 12683 Score = 105 bits (116), Expect = 5e-17 Identities = 154/212 (73%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| |||||||| ||| ||||| || ||||| ||| || |||||| |||||| Sbjct 13118 CAAG-TGAAGGGTTGACTCCTTTTGG--ATGTTGTAGTCACTAAGGGTTCTTCCATCTTC 13062 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 |||||| ||||| |||||||| |||||||| ||||| || || || ||||| || ||||| Sbjct 13061 AAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCTTG 13002 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTT 563443 || ||| || || |||||| ||||| | | || | | || || | || | Sbjct 13001 GATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAG-GTGATGGTCT 12943 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || ||||| || || ||||| ||||||||| Sbjct 12942 TTCCGGTAAGGGTCTTGACGAAGATTTGCATA 12911 >seq979 Length=120341 Score = 109 bits (120), Expect = 4e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 390811 ATACCATTATCACCATATACACATTGAATTAATTTGT-CATTGGCATTTCTTACGGTACC 390869 ||||||| ||||| || | ||| ||| ||| ||| | || | | ||||||| || || Sbjct 77721 ATACCATCCTCACCGTAAAGGAATTAAAT-AATCTGTTCTTTTGAAGTTCTTACAGTTCC 77779 Query 390870 ATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATATAACCAGT 390929 |||||||| || | | |||||||| |||| || |||||| || |||||||| Sbjct 77780 ATCATACTTCACCATCACGTCTTCTAGAGCCTTAATCAAACGTCTTTGAATGTAACCAGT 77839 Query 390930 GTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAGAA 390989 ||||||||||||| ||| |||| ||| | ||| || | ||| ||||| | |||||||| Sbjct 77840 TTCTGCAGTTTTAACTGCTGTATCAATGAGACCCTCACGACCTCCCATAGCATGGAAGAA 77899 Query 390990 AAATTCCATAGGATTGAGTCCA 391011 ||||| |||| | | |||| Sbjct 77900 GAATTCTTGAGGAGTTAATCCA 77921 >seq259 Length=203576 Score = 105 bits (116), Expect = 5e-17 Identities = 233/338 (69%), Gaps = 11/338 (3%) Strand=Plus/Minus Query 428248 AAGTTGTGTAAAGATATATCTTGCGCTTGCGGAATCTTTACCTCCTGACATTCTAGTTCC 428307 || ||||||| ||||||||| | |||||||| ||||| ||||| ||||||||| || Sbjct 73207 AATTTGTGTA--GATATATCTCGGACTTGCGGACTCTTTCCCTCCCATCATTCTAGTACC 73150 Query 428308 AAATTGTCCATTAGGCATCAATAAATTAATATTATTACTTCCCACATAATTTTGGGCCAT 428367 ||||| ||| |||| ||||||||| | ||| |||||||| ||| ||| || ||||| Sbjct 73149 AAATTAACCAATAGGTTGCAATAAATTGAGATTGTTACTTCCAACAAAATCTTATGCCAT 73090 Query 428368 ATTAACAATGGT-ACTAGTTAAGGATTGT-TCACCATGATGATATTTAGTTCTTTTTGAA 428425 ||| | || || | | | || || | |||||||||||||| || | || | Sbjct 73089 ATTTATTATAGTCATTTGCAAAC--TTATCTCACCATGATGATAAGCTGTGTGCTCTGCA 73032 Query 428426 ACTGCACCTTGTAATTCTGATACCTTTATTTCTTCTTTATAAATACCTTCTTCTACTGAT 428485 | ||| |||| | ||| || ||||| |||| ||| | | |||| | | Sbjct 73031 ATATATCCTGACAATTAGGCTACTTTGATTTCAGCTTT-TAATTTTC-TCTTAAAACAAG 72974 Query 428486 CCATAAAATACTTTGCGTTGTGATGGTTTGAATCCATCCATAATATTAGGTATAGATCTT 428545 | | | || | ||| | || || |||| |||||||| | | |||||||| || Sbjct 72973 CGA-ATAAGATTTTCCTTTAACCAGGCTTGAGACCATCCATCACAGATGGTATAGACCTC 72915 Query 428546 AAATTATCATCCACTGAG-AATGATATTAGTTCTTGAT 428582 | ||||||| | | |||| ||||| || |||||||||| Sbjct 72914 ATATTATCAGCTATTGAGAAATGA-ATGAGTTCTTGAT 72878 >seq2143 Length=26640 Score = 102 bits (112), Expect = 7e-16 Identities = 100/126 (79%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| |||||||| ||| ||||| || ||||| ||| || |||||| |||||| Sbjct 6032 CAAG-TGAAGGGTTGACTCCTTTTGG--ATGTTGTAGTCACTAAGGGTTCTTCCATCTTC 6088 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 |||||| ||||| |||||||| |||||||| ||||| || ||||| ||||| |||||||| Sbjct 6089 AAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTG 6148 Query 563385 AATTTT 563390 || || Sbjct 6149 GATCTT 6154 >seq17102 Length=140748 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 723242 AAATTATTATATTAGATGAAGCAGATTCTATGACTGATGAAGCTCAAGATGCACTTCGTG 723301 |||||||||| | |||||||| |||||||||||| ||| ||||||| ||| ||| | Sbjct 24865 AAATTATTATTCTCGATGAAGCCGATTCTATGACTATTGATGCTCAAGCTGCCCTTAGAA 24924 Query 723302 TTATTATTGAACAATATAGTACAACTACGCGATTTTGTTTTATCTGTAATTATATTTCCA 723361 || ||||| |||||| ||||| ||| |||| || |||| || || || || |||| Sbjct 24925 GAATCATTGAGCAATATTCTACAAATACCAGATTCTGCATTATTTGCAACTACATCTCCA 24984 Query 723362 AAATAACCGATGCTATAAAATCAAGATGT 723390 | || | ||| || | ||||||||| Sbjct 24985 AGATCATTGATCCTCTCGCTTCAAGATGT 25013 >seq234 Length=113606 Score = 91.5 bits (100), Expect = 1e-12 Identities = 270/407 (66%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 344257 TTATCTCCCACCATTTGTTTGAGACGTTGATAATATGTTGGACCAATGAATATTTTAACT 344316 ||||| || ||||| || || || | || ||| | || || || | || || |||| Sbjct 54858 TTATCACCAACCATATGCTTTAGTCTTTAATAGAAAGTAGGTCCTAAAAAGATCAAAACT 54917 Query 344317 TCCATTCTTTGTCCC-GTCATTCCATTATACATTGTTTCATTTCCCCATGCTTCATGTCC 344375 || | |||| | || || | ||| |||||||| ||||||||| || || || || Sbjct 54918 TCAAA-CTTTCTACCAGTAAATCCGTTATACATGACTTCATTTCCATATCTTTGATAGCC 54976 Query 344376 TAAAGCTACTAAATCA-TCATTAATTTTATTAATATTAACTCCTGTAAATGGAGTTGCAT 344434 ||| | | || | | | | |||||| || | ||| || || |||||||||| Sbjct 54977 TAATTC-ATGAAGTAACTAACTAATTTCATCCACATTCTACCCACAGAAAGGAGTTGCAT 55035 Query 344435 CTCCAT-ATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCAATTAATTGACCT 344493 | || | | | || |||||| | | ||||||| || || |||||||| || || || Sbjct 55036 CACCTTCAGAACCATTTAAT-GAAGCTACTTTACTTAACAAGCATTCAATCAAATGCCCA 55094 Query 344494 ATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGAATTAATCCTGAT 344553 || ||||| | | || ||| || |||||||| ||| ||||| |||| || ||| | Sbjct 55095 ATTGTCATTCTTGAAGGGATAGCATGAGGATTAACAATCATATCTGGAACTACACCTTCT 55154 Query 344554 TTTGTGAATGGAAGATCTGCACG---ATGAATTTTAAATCCAACTGTTCCTTTTTGTCCA 344610 | |||||||| ||||| | | || | | || ||| || ||||||| ||| Sbjct 55155 CTAGTGAATGGTAGATCCTCTTGTCTATAAGTCATA---CCACAAGTACCTTTTTAACCA 55211 Query 344611 GCTCTTGATGAGAATTTATCACCTACTGCTGGAATTCTTTCTGATCT 344657 | || | ||||||||||| | | ||||||||| ||| ||| Sbjct 55212 TGACGAGAGGCAAATTTATCACCAATTTATGGAATTCTCACTGCTCT 55258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027935810402800