Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq20086 125 6e-24 seq10467 125 6e-24 seq6376 125 6e-24 seq5238 125 6e-24 seq1293 125 6e-24 seq18779 107 2e-18 seq2143 98.7 8e-16 seq3525 93.3 3e-14 seq17194 87.8 1e-12 >seq20086 Length=32257 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || ||||||||||| || |||||||| | | |||||| | || ||| Sbjct 22180 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 22121 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || | ||| || ||||| || | | ||||||||| || ||||| |||||||| |||||| Sbjct 22120 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 22061 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || |||| | || ||||| | || || |||||||| | || || Sbjct 22060 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 22001 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| ||||| || || || |||| ||| Sbjct 22000 CCGGTCAAAGTCTTGACGAAGATCTACAT 21972 >seq10467 Length=17661 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || || || || ||||||||||| || |||||||| | | |||||| | || Sbjct 3822 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 3763 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| | ||| || ||||| || | | ||||||||| || ||||| |||||||| ||| Sbjct 3762 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 3703 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || || || |||| | || ||||| | || || |||||||| | || Sbjct 3702 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 3643 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || || || |||| ||| Sbjct 3642 TTACCGGTCAAAGTCTTGACGAAGATCTACAT 3611 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || || || || ||||||||||| || |||||||| | | |||||| | || Sbjct 13832 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 13891 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| | ||| || ||||| || | | ||||||||| || ||||| |||||||| ||| Sbjct 13892 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 13951 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || || || |||| | || ||||| | || || |||||||| | || Sbjct 13952 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 14011 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || || || |||| ||| Sbjct 14012 TTACCGGTCAAAGTCTTGACGAAGATCTACAT 14043 >seq6376 Length=13110 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || || || || ||||||||||| || |||||||| | | |||||| | || Sbjct 12220 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 12161 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| | ||| || ||||| || | | ||||||||| || ||||| |||||||| ||| Sbjct 12160 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 12101 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || || || |||| | || ||||| | || || |||||||| | || Sbjct 12100 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 12041 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || || || |||| ||| Sbjct 12040 TTACCGGTCAAAGTCTTGACGAAGATCTACAT 12009 >seq5238 Length=45295 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || || || || ||||||||||| || |||||||| | | |||||| | || Sbjct 22031 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 21972 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| | ||| || ||||| || | | ||||||||| || ||||| |||||||| ||| Sbjct 21971 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 21912 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || || || |||| | || ||||| | || || |||||||| | || Sbjct 21911 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 21852 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || || || |||| ||| Sbjct 21851 TTACCGGTCAAAGTCTTGACGAAGATCTACAT 21820 >seq1293 Length=7053 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || || || || ||||||||||| || |||||||| | | |||||| | || Sbjct 6509 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 6450 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| | ||| || ||||| || | | ||||||||| || ||||| |||||||| ||| Sbjct 6449 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 6390 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 ||||| || || || |||| | || ||||| | || || |||||||| | || Sbjct 6389 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 6330 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || || || |||| ||| Sbjct 6329 TTACCGGTCAAAGTCTTGACGAAGATCTACAT 6298 >seq18779 Length=42783 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | || || |||||||| || || ||||| || ||||| || Sbjct 12910 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 12851 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | |||||| || ||||| || | | ||||||||||| ||| Sbjct 12850 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGA 12791 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| || || || || |||| | |||||| || | || || Sbjct 12790 ATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACA 12731 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || | || || || || || ||||| Sbjct 12730 TCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 12684 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| || |||||||| ||||| || || || ||||| || Sbjct 12682 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 12623 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | |||||| || || || || | | ||||||||||| || Sbjct 12622 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 12563 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || || ||| |||| | |||||||| | || || Sbjct 12562 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 12503 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 || | ||||| || ||||| || | || || || || || |||||| ||| Sbjct 12502 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTA 12451 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | || || |||||||| || || ||||| || ||||| || Sbjct 13138 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 13079 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | |||||| || ||||| || | | ||||||||||| || Sbjct 13078 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 13019 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || ||| || ||| | || | || || || | || || Sbjct 13018 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACG 12959 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || ||||| | || || || || || ||||| Sbjct 12958 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 >seq2143 Length=26640 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | ||| || |||||||| ||||| || || || ||||| || Sbjct 6499 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 6558 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | |||||| || || || || | | ||||||||||| || Sbjct 6559 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 6618 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || || ||| |||| | |||||||| | || || Sbjct 6619 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 6678 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 || | ||||| || ||||| || | || || || || || |||||| ||| Sbjct 6679 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTA 6730 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | || || |||||||| || || ||||| || ||||| || Sbjct 6012 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 6071 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | |||||| || ||||| || | | ||||||||||| ||| Sbjct 6072 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGA 6131 Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385 || ||||| |||||||| || || Sbjct 6132 ATACCTTCCTTATCTTGGATCTT 6154 >seq3525 Length=54936 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| ||||| | | | ||||||||| || || || ||| ||| |||||||| || | Sbjct 24174 TCCACCTCTGAGTCTAAGAACTAAATGGAGTGTTGACTCTGTTTAAATATTGTAGTCTCC 24115 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || || | || || |||| | ||||||||||||| || | ||||| || || || Sbjct 24114 CAATGTCCTTCCGTCCTCTAATTACATACCTGCAAATATTAATCTTTGTTGGTCAGGAGG 24055 Query 101362 AATGCCTTCTTTATCTTGAATTTT 101385 |||||| |||||||||| |||||| Sbjct 24054 AATGCCCTCTTTATCTTAAATTTT 24031 >seq17194 Length=120762 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || || || |||||||| || || || || || ||||| |||| | Sbjct 44562 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 44621 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || ||||| || || || || || || | | |||||||||||| || Sbjct 44622 AGGGTTCTGCCGTCTTCCAACTGTTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGTGGG 44681 Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| ||||| || || Sbjct 44682 ATTCCCTCTTTGTCTTGGATCTT 44704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396154181582040