Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq17288 149 1e-30 >seq17288 Length=143976 Score = 149 bits (164), Expect = 1e-30 Identities = 373/560 (67%), Gaps = 20/560 (4%) Strand=Plus/Minus Query 48099 GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGT 48158 |||||||| || ||||||| ||||| | ||| |||||||| |||||| ||||||| Sbjct 117010 GTTTGTTGTTCAAGTGCTTG---TAGAGAAGGCAAGCAAAGTCAGTGTGCATACCTTCGT 116954 Query 48159 CCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCC 48218 | | |||||| | || |||||| |||||| ||||||| || | || || |||| Sbjct 116953 CTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTTCTTAAGCC 116894 Query 48219 AGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGA 48278 |||| |||| ||| || || ||||||||||||||||| | || ||||| || | | Sbjct 116893 AGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAGCAGCGAAAGCAATTA 116834 Query 48279 GCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 | ||||| |||| |||| || || ||||| || ||||| || ||||||| Sbjct 116833 GTCTCTCAGCGAAGCTAGCGCTC---TCACCAATCCACTTAATGGCCCATTCAGCCTTCT 116777 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG---CTTCTTGCACTCACCTGCGT 48395 | | | ||| || | ||||| |||||| || ||| ||| || || Sbjct 116776 TAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTT---CTCGTGTGGGT 116720 Query 48396 CCGCAAC--AT-AGGTAGT-GAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATA 48451 | || || ||| || || || || ||| |||| ||||| | ||||| || Sbjct 116719 C----ACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTCCATC 116664 Query 48452 GCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTC 48511 || ||||| || ||||| | || || || || | ||| || |||||||| Sbjct 116663 ATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAATCTC 116604 Query 48512 TCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTA 48571 | || ||||| ||||| || || ||||| ||||| || ||||||||||| || || Sbjct 116603 TGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGTGCTTG 116544 Query 48572 AGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCC 48631 | || || | |||||||| | |||| | ||| ||| ||||| || | ||||| Sbjct 116543 ATAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCGAGGTCG 116484 Query 48632 ACTTCTTCCACAGTCCAGAA 48651 | ||| || |||||||| Sbjct 116483 ATTTCCTCAGAGGTCCAGAA 116464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931233312204800