Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq17288 105 1e-17 >seq17288 Length=143976 Score = 105 bits (116), Expect = 1e-17 Identities = 171/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||||| |||||||| | ||||||||| || | ||| | || | || || Sbjct 116788 TGGGCCATTAAGTGGATTG---GTGAGAGCGCTAGCTTCGCTGAGAGACTAATTGCTTTC 116844 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 |||||| | ||||||||||| ||| || || || ||| | ||||||||||| ||| | Sbjct 116845 GCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGC-TCAATCTTCTGGCTTAAGAA 116903 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || |||||| || || ||| || || |||||||| || ||||| ||| | Sbjct 116904 GCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGGTAT 116963 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 |||| || ||||| ||||| ||||||| | |||||| | |||||| |||| | || Sbjct 116964 GCACACTGACTTTGCTTGCCTTCTCTACAAG---CACTTGAACAACAAACTTTCTAACGA 117020 Query 26073 GA 26074 || Sbjct 117021 GA 117022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928546176396800