Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq19631 91.5 9e-14 seq4898 91.5 9e-14 >seq19631 Length=63550 Score = 91.5 bits (100), Expect = 9e-14 Identities = 174/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Plus Query 78365 ATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCC 78424 |||||| || || | |||||| ||||| | | |||||||| |||||| | || ||| Sbjct 34599 ATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCTCTCTTCAATCC 34658 Query 78425 GCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCC 78484 ||||| || |||| || || | |||| || |||||||| || ||||| || Sbjct 34659 GCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAGGAATACC 34718 Query 78485 TAAGA---ATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGA 78541 |||| ||| |||| || ||| |||| |||||| |||||||||||| | || Sbjct 34719 -AAGACCCATA--TCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAGCAGA 34775 Query 78542 TACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAG-TCAGCAG 78600 || ||||| | || | |||| || || || || ||||| | | |||| ||||||| Sbjct 34776 AACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATGT-TTTTAAGATCAGCAG 34834 Query 78601 GATTCCAAGCA 78611 ||||||||| Sbjct 34835 CGTTCCAAGCA 34845 >seq4898 Length=10221 Score = 91.5 bits (100), Expect = 9e-14 Identities = 174/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Plus Query 78365 ATGATTCTTGTAAATATGAGCGTCACCGATTGTGTGAATGAAGTCTCCTACTTCCAGTCC 78424 |||||| || || | |||||| ||||| | | |||||||| |||||| | || ||| Sbjct 3839 ATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCTCTCTTCAATCC 3898 Query 78425 GCACAAATGCGCAATAATATGTGTAAGTAATGCGTATGAAGCAATGTTAAATGGAATTCC 78484 ||||| || |||| || || | |||| || |||||||| || ||||| || Sbjct 3899 GCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAGGAATACC 3958 Query 78485 TAAGA---ATACGTCACCGCTTCGTTGGTACAATTGGCAACTTAGCTTTCCATCAACTGA 78541 |||| ||| |||| || ||| |||| |||||| |||||||||||| | || Sbjct 3959 -AAGACCCATA--TCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAGCAGA 4015 Query 78542 TACGTAAAACTGGAATAGAGTGTGACAAGGCGGTAGTGCCATATCATCTAAG-TCAGCAG 78600 || ||||| | || | |||| || || || || ||||| | | |||| ||||||| Sbjct 4016 AACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATGT-TTTTAAGATCAGCAG 4074 Query 78601 GATTCCAAGCA 78611 ||||||||| Sbjct 4075 CGTTCCAAGCA 4085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300065911096000