Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq10467 89.7 4e-13 seq6376 89.7 4e-13 seq5238 89.7 4e-13 seq1293 89.7 4e-13 seq20086 87.8 2e-12 >seq10467 Length=17661 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | ||| |||||||||||||| |||||||| || || | |||||| Sbjct 3704 GACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAA 3763 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || | ||| || | ||||| ||||| ||||||||||| ||||| ||| |||| || Sbjct 3764 GACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 3822 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | ||| |||||||||||||| |||||||| || || | |||||| Sbjct 13950 GACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAA 13891 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || | ||| || | ||||| ||||| ||||||||||| ||||| ||| |||| || Sbjct 13890 GACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 13832 >seq6376 Length=13110 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | ||| |||||||||||||| |||||||| || || | |||||| Sbjct 12102 GACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAA 12161 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || | ||| || | ||||| ||||| ||||||||||| ||||| ||| |||| || Sbjct 12162 GACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 12220 >seq5238 Length=45295 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | ||| |||||||||||||| |||||||| || || | |||||| Sbjct 21913 GACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAA 21972 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || | ||| || | ||||| ||||| ||||||||||| ||||| ||| |||| || Sbjct 21973 GACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 22031 >seq1293 Length=7053 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | ||| |||||||||||||| |||||||| || || | |||||| Sbjct 6391 GACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAA 6450 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || | ||| || | ||||| ||||| ||||||||||| ||||| ||| |||| || Sbjct 6451 GACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 6509 >seq20086 Length=32257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | ||| |||||||||||||| |||||||| || || | |||||| Sbjct 22065 GACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAA 22124 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 || | ||| || | ||||| ||||| ||||||||||| ||||| ||| |||| Sbjct 22125 GACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCACTTGGT 22180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425271451547880