Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 >seq3 Length=25750 Score = 100 bits (110), Expect = 3e-16 Identities = 492/772 (64%), Gaps = 26/772 (3%) Strand=Plus/Minus Query 38620 CCACCCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTC 38679 ||| ||||| | | |||||||||||||| || || || || | ||| || | | || Sbjct 23400 CCAGCCTTTATGAAGCGCAATTTCTTCCAAACAGGCTATTTTGATTCCCTGCCGATGTTC 23341 Query 38680 AATAGTCTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCA 38739 || ||||| | || | | ||||| | | | | || || || || |||||||| Sbjct 23340 AACTGTCTGGATAAAATTAGATGCTTCTAGTAAAGAATCATGGGTACCAGTATCAAGCCA 23281 Query 38740 AGTAAATCCTCG--TCCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGA 38797 || ||| || || || | || || | ||| || | | ||| ||||| ||| Sbjct 23280 AGCAAAACCACGTTTCATTGTGATT--ACATTTAATTTACCCTGTTCCAGGTATAAGCGG 23223 Query 38798 TTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATG-CACGTTG 38856 || | ||| || || || || || ||||| || || || |||||||| | || | | Sbjct 23222 TTTAGATCGGTAATTTCAAGCTCACCACGAGCTGATGGTTTTACTTCTTTCGCCAAGCT- 23164 Query 38857 AATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTC 38916 || |||| ||||||| ||||| || || || || ||| ||||||| ||||| | || Sbjct 23163 AACAACACTACTATCATAAAAATATAACCCAGTTACCGCAAAATCTGACTTAGGCTCTTT 23104 Query 38917 AGGTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCG 38976 ||||| || |||||| ||| ||| ||| |||| ||||| ||||| | || Sbjct 23103 TGGTTTTTCCTCAATACTAATCACTTTTGTGTTAGCATCAAACTCAACTACACCATAACG 23044 Query 38977 TTCAGGATCTTTCACCAAATACCCGAAAATACAAGCTCCGCCCCAAACATCTACCATCTC 39036 || || || |||| ||| | |||| |||||| || ||| || Sbjct 23043 CTCTGGGTCAGCCACCTGATAAGCAAAAACTGTAGCTCC----------ACTTGCAT-TC 22995 Query 39037 ACTGGCGTTAATCAGTAGTTTACCAAAGCTTTGTCCGAAGAATAGGTTGTCACCTAAAAT 39096 |||| || ||||| | | | | ||| | ||||| || ||||| | ||| Sbjct 22994 -TGGGCGGAGATAAGTAGCTCAGTCATTCCACTACCGTAAAATAGATTATCACCAAGAAT 22936 Query 39097 AAGAGCAACAGAGTCTTCTCCGATAAAA--TCTTTACCTATGATGAAAGCTTCCGCAAGA 39154 ||| || | || | | ||||| |||| ||| ||||| || |||| || | Sbjct 22935 CAGA-CACGCCGGACTAC-CATTTAAAAATTCTTCACCAATGATAAATGCTTGTGCCAAT 22878 Query 39155 CCTCGTGGCTCGGATTGGATTGCGTAAGTGAGTTTTATCCCAAACATAGACCCATCTCCG 39214 || ||| | | ||| | ||| |||| | | || || || | ||||| || Sbjct 22877 CCATCTGGGTTTGGTTGAACTGCATAAGATATACTCATACCCCACTGACTACCATCACCA 22818 Query 39215 AGAAGATACTCAAAGTCTTCCTGATCACCTGGTGTGGTGATGATTAAAATATCCTTAATG 39274 || || | ||||| ||| |||||| | || || |||| ||| |||| Sbjct 22817 AGTAGCTGTTCAAAACGCGAAATATCTTGTGGTGTTGAAATAATCAAAACATCTCTAATT 22758 Query 39275 TCAGCCAACATCAATACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACACAGGGAGC 39334 ||||| ||||| |||| || | || || || ||||| ||||| ||||| || || || Sbjct 22757 TCAGCTAACATTAATATTGACAGCGGATAATATATCATTGGTTTATCATAAACCGGAAGT 22698 Query 39335 AATTGCTTGCTCACACTGC--GTGTTACCGGATGAAGGCGGGTTCCACTTCC 39384 ||||||||| ||| ||| |||| ||||||| ||||| || ||||| || Sbjct 22697 AATTGCTTG--GACATTGCAAGTGTAGCCGGATGTAGGCGTGTACCACTACC 22648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472478449326400