Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1748 203 2e-47 >seq1748 Length=94692 Score = 203 bits (224), Expect = 2e-47 Identities = 209/271 (77%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACT-TTCTCCATAAATAAATCTG 25946 ||||||||| | | | |||||| ||||| |||||| ||||| || || | ||||| Sbjct 39986 ATTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTC-ATGAAAAGATCTG 39928 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 || |||| | || || || | ||||| ||||| | ||||| || |||||||||||| Sbjct 39927 GAGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 39868 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 | || | | ||| || | ||||| | |||||||||||| | ||||| ||| ||| | Sbjct 39867 TGAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 39808 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 | ||||||||||| ||||||| ||| ||||||||||| || ||||||||||| || |||| Sbjct 39807 CCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACA 39748 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 |||||| |||||| ||||| |||||||||| Sbjct 39747 TTGGAATCAATCCATTTGAATATCCGTTTGT 39717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252960681449000