Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq17929 104 3e-17 seq1642 91.5 2e-13 >seq17929 Length=58242 Score = 104 bits (114), Expect = 3e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139845 TTATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTT 139904 |||||||| | | ||| | ||| || |||| ||| || ||||| || ||||| || ||| Sbjct 48321 TTATATGCCATAAACATAGTCTCAGCAGCTGAAGTAGCCTCATCCAAGAGAGAAGCATTT 48262 Query 139905 GCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAAT 139964 | | | | || | || || | | |||| | | || |||| | ||| | | Sbjct 48261 GAGACGTCGAGTTTGGTTAACTCAGTCACCATAGTTTAGAAGTTTAATAGGGATTCTAGT 48202 Query 139965 CTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCA 140024 || || |||| ||||||||||||||||| ||||||| ||||||||| | ||||| ||| Sbjct 48201 CTACCTTGAGCGATCTCAGCTTGATAGGGGGTGTAAGGTGTGTACCAGTTTGGATTTTCA 48142 Query 140025 AGAACGTTTC-GCTG-TATGACTGGGGGTGTAATGGTTCCATAGTATCCT 140072 ||||| || | ||| || ||||||||||| | ||| |||||| ||| Sbjct 48141 AGAACATTCCTTCTGATAACACTGGGGGTGT--TAGTTGGATAGTAACCT 48094 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 137769 ATCTCTCTTTTTATTTTATCCATAGCATCTACAAATCTTTGCAACTCA-TCGAGTGACTC 137827 |||||| | | ||| | | ||| ||||| | ||||| | || |||| || || || Sbjct 51305 ATCTCTTCTCTAATTCTCTTCATGGCATCGATGAATCTGTCCATCTCAATCTTGTCT-TC 51247 Query 137828 AGACTCTGTGGGTTCTACCATCATAGTTCCTAACACAGGCCACGATAGTGTAGGTGCATG 137887 |||||| || || || | ||| | | |||| || || | |||| ||||||||||| Sbjct 51246 AGACTCAGTTGGCTCAATCATGAGACTTCCAGCAACTGGGAAAGATACAGTAGGTGCATG 51187 Query 137888 AAATCCATAGTCCATAAGTCTCTTTGCTATATC 137920 ||||||||||||||||||||||| |||||||| Sbjct 51186 GAATCCATAGTCCATAAGTCTCTTAGCTATATC 51154 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| || || || || || ||||| || ||||| ||||| |||||| |||||||||| Sbjct 49326 CAGAAATGTTAGCAAGAAGGGCTTGAGCAGTGCAAATGTTTGAGGTTGCCTTGTCTCTTC 49267 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGC 139393 | |||||||| ||||| ||||| || || | |||||| || Sbjct 49266 TGATATGCTGTTCTCTGGTTTGGAGAGCCATTCTGTAAGC 49227 >seq1642 Length=60753 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 139845 TTATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTT 139904 |||||||| | | ||| | ||| || |||| ||| || ||||| || ||||| || ||| Sbjct 60565 TTATATGCCATAAACATAGTCTCAGCAGCTGAAGTAGCCTCATCCAAGAGAGAAGCATTT 60624 Query 139905 GCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAAT 139964 | | | | || | || || | | |||| | | || |||| | ||| | | Sbjct 60625 GAGACGTCGAGTTTGGTTAACTCAGTCACCATAGTTTAGAAGTTTAATAGGGATTCTAGT 60684 Query 139965 CTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCA 140024 || || |||| ||||||||||||||||| ||||||| ||||||||| | ||||| ||| Sbjct 60685 CTACCTTGAGCGATCTCAGCTTGATAGGGGGTGTAAGGTGTGTACCAGTTTGGATTTTCA 60744 Query 140025 AGAACGTT 140032 ||||| || Sbjct 60745 AGAACATT 60752 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 137769 ATCTCTCTTTTTATTTTATCCATAGCATCTACAAATCTTTGCAACTCA-TCGAGTGACTC 137827 |||||| | | ||| | | ||| ||||| | ||||| | || |||| || || || Sbjct 57581 ATCTCTTCTCTAATTCTCTTCATGGCATCGATGAATCTGTCCATCTCAATCTTGTCT-TC 57639 Query 137828 AGACTCTGTGGGTTCTACCATCATAGTTCCTAACACAGGCCACGATAGTGTAGGTGCATG 137887 |||||| || || || | ||| | | |||| || || | |||| ||||||||||| Sbjct 57640 AGACTCAGTTGGCTCAATCATGAGACTTCCAGCAACTGGGAAAGATACAGTAGGTGCATG 57699 Query 137888 AAATCCATAGTCCATAAGTCTCTTTGCTATATC 137920 ||||||||||||||||||||||| |||||||| Sbjct 57700 GAATCCATAGTCCATAAGTCTCTTAGCTATATC 57732 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 139294 CAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTC 139353 |||| || || || || || ||||| || ||||| ||||| |||||| |||||||||| Sbjct 59560 CAGAAATGTTAGCAAGAAGGGCTTGAGCAGTGCAAATGTTTGAGGTTGCCTTGTCTCTTC 59619 Query 139354 TAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGC 139393 | |||||||| ||||| ||||| || || | |||||| || Sbjct 59620 TGATATGCTGTTCTCTGGTTTGGAGAGCCATTCTGTAAGC 59659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578812252014400