Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1748 132 6e-26 seq17288 107 2e-18 >seq1748 Length=94692 Score = 132 bits (146), Expect = 6e-26 Identities = 689/1080 (64%), Gaps = 46/1080 (4%) Strand=Plus/Plus Query 75191 GATGGCATCC---TCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 ||||||| || || | || | |||||| ||||| | ||| | || || || || Sbjct 39399 GATGGCAACCAAATCCTTGAGAGACCACAGCACATGCTTATGAGAGTAAGTATTGGTATT 39458 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 || |||||| |||| || | || ||||| ||||| |||| ||| ||| Sbjct 39459 CATAAAGAAGACCTTGAGTCAGCGTTCGAGACTTACGATTTGATGAGTCAACTGTGGTTT 39518 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||| || || ||||| || || || |||| ||||||| ||| ||||| |||| | Sbjct 39519 ACTCATGCCACTCCAACTCTGTTTAACTCTGGAACACCAAAACCTTAGATG---AGTT-C 39574 Query 75368 TTCCTTATCGCCAAC----AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 75423 || ||| | || ||| || || ||||| || | ||||| | || |||| | | | Sbjct 39575 TTGCTTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATTTTTGAAACTTTAAAATA 39634 Query 75424 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACA---TCCATGATGTGAG 75480 ||| ||||||||| ||||| ||||| || | | || ||| ||||| || Sbjct 39635 AATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGT-CTCAGTGTCC--GATGTAAG 39691 Query 75481 AGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 75540 ||| | | || || | || ||||| || | ||| |||| | ||||||||| | Sbjct 39692 AGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCCAATGTT 39751 Query 75541 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC---GCAAGGGGTC 75597 || || || | ||| || | || || || ||| || | | ||||| | Sbjct 39752 AAAGGTTTTCAATGACACCGCAAGATACGTGGATTAAGGTGGTGGAAAAAGAAAGGGAGC 39811 Query 75598 CATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACT 75657 |||| ||||| | ||||||||||| || |||||| || |||||| | | || Sbjct 39812 TTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACTCAGAAA 39871 Query 75658 CAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGA 75717 || || ||| | |||||| | | |||||| || || | | || |||| |||||| Sbjct 39872 GAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTGGACTCCAGA 39931 Query 75718 CCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGA-CAAGG 75776 |||||||||| | ||||| | || | ||| |||| | |||||| | || | Sbjct 39932 TCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTCATGTGTCCAAATGAATG 39991 Query 75777 CACCAGGTCT--CTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA 75834 | ||||| || || | || | ||||||||||||||| || |||| ||||||| Sbjct 39992 C-CCAGGACTTACTACTACATG--GGGTGAGGAGTTTGAGAAACTTTACATCGAGTATGA 40048 Query 75835 AGAGGAGGGTAGAG---CCAATGCGACTGTACCAGCCGCCGATG--TTTGGAAGGCT--A 75887 | ||||||| ||| |||||| || |||| | ||| || | | Sbjct 40049 AACCACTGGTAGAGGTCGCAA---GACTGTTAAGGC--TAGATGGCTCTGG--GGTTAAA 40101 Query 75888 TTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACA 75947 | | | || || | |||||||| || || |||||||||||||| |||||||| || | Sbjct 40102 TCATAGAGTCTCAAAACGAGACTGGTACTCCTTATATGCTTTACAAAGATGCTTGCAATA 40161 Query 75948 AGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTT 76007 || ||| | | ||| | || ||||| ||||| || || |||||||| || || Sbjct 40162 GAAAATCCAACTAGTAAAATCTTGGCACAATTAAGAGTTCTAACCTTTGCACTGAGATCG 40221 Query 76008 TAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAA 76067 | || | || | ||||| |||||| || ||| | || || || | | || | Sbjct 40222 TCGAATTTACCAGTCCAGATGAAGTGGCTGTCTGTAATCTAGCTTCTATTG-CTTTAAAT 40280 Query 76068 AG---TATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAA 76124 || ||| || | || || | ||||||||| || | ||| | | || | Sbjct 40281 AGATTCGTGTTAA--AGGAAACCTAAGAATATGATTATGAGAAGTTACATTACGTGACCA 40338 Query 76125 AGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTG 76184 ||| |||| || |||||||| | | || || | |||| ||||| ||| | Sbjct 40339 AGAGAATTACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCTGTTCCTGAAG 40398 Query 76185 CGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 | |||| || ||| | |||||||||| ||||| | ||||| |||| | || |||| Sbjct 40399 CTAGAAATTCAAATCTTAGACACAGACCAATTGGAATTGGTGTCTAAGGATTTGCAGATG 40458 >seq17288 Length=143976 Score = 107 bits (118), Expect = 2e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTC-CTTCGCCGAGCG 65081 |||||||| ||||||| || || ||| ||| | || |||| |||||| ||| | Sbjct 116776 AAGAAGGCTGAATGGGCCATTAAGTGGATTGGTG-AGAG---CGCTAGCTTCGCTGAGAG 116831 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| || || | | ||||| ||||||||||| || || |||||| | || | Sbjct 116832 ACTAATTGCTTTCGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTT 116891 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| || ||||||||||| || |||||||||||| || ||||| | Sbjct 116892 CTGGCTTAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAG 116951 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||| || ||| | ||| || ||||| Sbjct 116952 AGACGAAGGTATGCACACTGACTTTGC 116978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596377802873600