Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq18779 123 4e-23 seq20086 104 4e-17 seq10467 104 4e-17 seq6376 104 4e-17 seq5238 104 4e-17 seq1293 104 4e-17 seq2143 84.2 4e-11 >seq18779 Length=42783 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| || |||| || | || | ||| || || || Sbjct 12919 ATTTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTG 12860 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | ||||| ||| || | ||| ||||| |||||||| | ||| |||||| Sbjct 12859 TAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 12800 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || |||| || | ||| |||||| || || Sbjct 12799 TCGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGAT 12740 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || ||||| || || || || || || || || || || |||||||| Sbjct 12739 GGCTCAACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 12684 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| || |||| || | || | ||| || || || Sbjct 13147 ATTTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTG 13088 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | ||||| ||| || | ||| ||||| |||||||| | ||| |||||| Sbjct 13087 TAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 13028 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || || | || | ||| ||| ||||| ||| Sbjct 13027 TCGGGTGGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAA 12968 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | || || || || || || || || || || || |||||||| Sbjct 12967 GGCTCGACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 >seq20086 Length=32257 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || || || || ||||| || || || | ||||| ||||| || | |||| Sbjct 22153 ATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTC 22094 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || || |||||||| ||||| || |||| || | ||| || ||| Sbjct 22093 TGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTA 22034 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||| || || ||||| ||||| ||||| || | || || || || || | | Sbjct 22033 TCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTAC 21974 Query 193359 ATTTT 193363 ||||| Sbjct 21973 ATTTT 21969 >seq10467 Length=17661 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || || || || ||||| || || || | ||||| ||||| || | |||| Sbjct 3792 ATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTC 3733 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || || |||||||| ||||| || |||| || | ||| || ||| Sbjct 3732 TGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTA 3673 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||| || || ||||| ||||| ||||| || | || || || || || | | Sbjct 3672 TCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTAC 3613 Query 193359 ATTTT 193363 ||||| Sbjct 3612 ATTTT 3608 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || || || || ||||| || || || | ||||| ||||| || | |||| Sbjct 13862 ATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTC 13921 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || || |||||||| ||||| || |||| || | ||| || ||| Sbjct 13922 TGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTA 13981 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||| || || ||||| ||||| ||||| || | || || || || || | | Sbjct 13982 TCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTAC 14041 Query 193359 ATTTT 193363 ||||| Sbjct 14042 ATTTT 14046 >seq6376 Length=13110 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || || || || ||||| || || || | ||||| ||||| || | |||| Sbjct 12190 ATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTC 12131 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || || |||||||| ||||| || |||| || | ||| || ||| Sbjct 12130 TGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTA 12071 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||| || || ||||| ||||| ||||| || | || || || || || | | Sbjct 12070 TCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTAC 12011 Query 193359 ATTTT 193363 ||||| Sbjct 12010 ATTTT 12006 >seq5238 Length=45295 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || || || || ||||| || || || | ||||| ||||| || | |||| Sbjct 22001 ATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTC 21942 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || || |||||||| ||||| || |||| || | ||| || ||| Sbjct 21941 TGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTA 21882 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||| || || ||||| ||||| ||||| || | || || || || || | | Sbjct 21881 TCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTAC 21822 Query 193359 ATTTT 193363 ||||| Sbjct 21821 ATTTT 21817 >seq1293 Length=7053 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || || || || ||||| || || || | ||||| ||||| || | |||| Sbjct 6479 ATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTC 6420 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || || |||||||| ||||| || |||| || | ||| || ||| Sbjct 6419 TGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTA 6360 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| ||| || || ||||| ||||| ||||| || | || || || || || | | Sbjct 6359 TCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTAC 6300 Query 193359 ATTTT 193363 ||||| Sbjct 6299 ATTTT 6295 >seq2143 Length=26640 Score = 84.2 bits (92), Expect = 4e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| || |||| || | || | ||| || || || Sbjct 6003 ATTTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTG 6062 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | ||||| ||| || | ||| ||||| |||||||| | ||| |||||| Sbjct 6063 TAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 6122 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGG 193278 || || || || ||||| |||||||| || |||| Sbjct 6123 TCGGGGGGAATACCTTCCTTATCTTGGATCTTGG 6156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899365161110400