Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq20086 113 9e-20 seq10467 113 9e-20 seq6376 113 9e-20 seq5238 113 9e-20 seq1293 113 9e-20 >seq20086 Length=32257 Score = 113 bits (124), Expect = 9e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || | ||| | ||||| ||| || |||||||| || |||| | || ||| Sbjct 22180 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 22121 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || | || ||||||||||| | ||||||||||||||| || || |||||||| ||||| Sbjct 22120 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGA 22061 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || || || || || | ||| || | ||||| || |||||||| || ||| Sbjct 22060 ATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTA 22001 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || | || |||| |||||| Sbjct 22000 CCGGTCAAAGTCTTGACGAAGATCTACATTTT 21969 >seq10467 Length=17661 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || || || || | ||| | ||||| ||| || |||||||| || |||| | || Sbjct 3822 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 3763 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 ||||| | || ||||||||||| | ||||||||||||||| || || |||||||| ||| Sbjct 3762 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 3703 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || || || || || || | ||| || | ||||| || |||||||| || Sbjct 3702 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 3643 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || || || | || |||| |||||| Sbjct 3642 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 3608 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || || || || | ||| | ||||| ||| || |||||||| || |||| | || Sbjct 13832 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 13891 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 ||||| | || ||||||||||| | ||||||||||||||| || || |||||||| ||| Sbjct 13892 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 13951 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || || || || || || | ||| || | ||||| || |||||||| || Sbjct 13952 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 14011 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || || || | || |||| |||||| Sbjct 14012 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 14046 >seq6376 Length=13110 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || || || || | ||| | ||||| ||| || |||||||| || |||| | || Sbjct 12220 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 12161 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 ||||| | || ||||||||||| | ||||||||||||||| || || |||||||| ||| Sbjct 12160 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 12101 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || || || || || || | ||| || | ||||| || |||||||| || Sbjct 12100 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 12041 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || || || | || |||| |||||| Sbjct 12040 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 12006 >seq5238 Length=45295 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || || || || | ||| | ||||| ||| || |||||||| || |||| | || Sbjct 22031 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 21972 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 ||||| | || ||||||||||| | ||||||||||||||| || || |||||||| ||| Sbjct 21971 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 21912 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || || || || || || | ||| || | ||||| || |||||||| || Sbjct 21911 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 21852 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || || || | || |||| |||||| Sbjct 21851 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 21817 >seq1293 Length=7053 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || || || || | ||| | ||||| ||| || |||||||| || |||| | || Sbjct 6509 AAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCT 6450 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 ||||| | || ||||||||||| | ||||||||||||||| || || |||||||| ||| Sbjct 6449 TCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCT 6390 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || || || || || || | ||| || | ||||| || |||||||| || Sbjct 6389 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTC 6330 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || || || | || |||| |||||| Sbjct 6329 TTACCGGTCAAAGTCTTGACGAAGATCTACATTTT 6295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984155576922000