Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3525 93.3 8e-14 >seq3525 Length=54936 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| |||| | |||||||| | || | |||| | ||||||| || ||| Sbjct 24173 CCACCTCTGAGTCTAAGAACTAAATGGAGTGTTGACTCTGTTTAAATATTGTAGTCTCCC 24114 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | | | |||| || |||| |||| ||||| |||||||| ||||||||||| || Sbjct 24113 AATGTCCTTCCGTCCTCTAATTACATACCTGCAAATATTAATCTTTGTTGGTCAGGAGGA 24054 Query 171963 ATTCCTTCTTTATCTTGTATTTTA 171986 || || |||||||||| |||||| Sbjct 24053 ATGCCCTCTTTATCTTAAATTTTA 24030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904844998776000