Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1748 140 1e-27 seq728 111 5e-19 seq979 104 7e-17 seq7850 95.1 4e-14 seq1710 86.0 2e-11 >seq1748 Length=94692 Score = 140 bits (154), Expect = 1e-27 Identities = 579/896 (65%), Gaps = 22/896 (2%) Strand=Plus/Minus Query 155489 ATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTCACATA 155548 ||| ||||| ||||||| ||| || | | |||||| |||| ||| ||| |||| Sbjct 40373 ATCTATAATTTTATTTAGATTCTTAGTAATTCTCTTGGTCACGTAATGTAACTTCTCATA 40314 Query 155549 GTCAAATGTTT---TATCCTCATTTACA--AACATACCAAGACCAATAGACGCCAGATTA 155603 ||| || || | |||| || ||| || || | | ||||||| || |||||| Sbjct 40313 ATCATATTCTTAGGTTTCCT--TTAACACGAATCTATTTAAAGCAATAGAAGCTAGATTA 40256 Query 155604 CATACCGCAGTCTCCTTGTCGTC-GCTGTATTCTACAATCTCACAGCACAGGTTAGAACT 155662 || || || || | | | | | | | |||| || |||||| ||| ||||||||||| Sbjct 40255 CAGACAGCCA-CTTCATCTGGACTGGTAAATTCGACGATCTCAGTGCAAAGGTTAGAACT 40197 Query 155663 CTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAAT 155722 ||| || ||||| | ||| | || ||| ||||| || || |||||||| ||||| || || Sbjct 40196 CTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCTATTGCAAGCATCTTTGTAAAGCAT 40137 Query 155723 GTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATT 155782 || || || || ||||| | || | || | || | |||||| | || || Sbjct 40136 ATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGATTTAACCCCAGAGCCATCTAGCCTT 40077 Query 155783 AATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAA-TCCT 155841 || |||| ||| || | ||||| | || || || ||| || |||| Sbjct 40076 AACAGTCTTGCGACCTCTACCAGTGGTTTCATACTCGATGTAAAG-TTTCTCAAACTCCT 40018 Query 155842 CACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTAT 155901 |||| | | | | ||||| ||||| | || || || | || | |||| || || Sbjct 40017 CACCCCATGTAGTAGTAAGTCCTGGGCATTCATTTGGACACATGAGAGTCCAATCTTCAT 39958 Query 155902 TACCGATTACACGCT--CCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCT 155959 | | || || || ||| || | ||| | ||||| ||| ||||||||||| || Sbjct 39957 T--TGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAGAAAAGGTCTCT 39900 Query 155960 TGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGG 156019 || | ||| || | ||||||||||| | || | | ||| || | ||||||| Sbjct 39899 AGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAAGTCGTAGATATCAGC 39840 Query 156020 ATGGTGTGGCTCCAGATACATAGC-AAAACTACCATTCCTCTT--GCCACCCTGATCTAC 156076 || ||| || | ||| | ||| ||| || || ||| | || ||||| | ||| || Sbjct 39839 GTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCACCTTAATCCAC 39780 Query 156077 ATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATT 156136 || | || || | |||||| || || ||| ||||| | ||||| ||| || || Sbjct 39779 GTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGAATCAATCCATTTGAATATCCGTT 39720 Query 156137 GGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG-TAGTCCAATACCAC 156195 || || | || | || ||| | | ||| | || || | ||| ||||||| Sbjct 39719 TGTACCTCTGATGTAGGAGTCAGCAGCTCTTACA-TCGGACACTGAGACTCCGATACCAC 39661 Query 156196 CTG-ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAA 156254 | | | | ||| || || ||| || |||| ||| | |||||||| ||||| || Sbjct 39660 CAGCAGCCTTT-GAGATAATAGCAATTTATTTTAAAGTTTCAAAAATACCATCAATGGAG 39602 Query 156255 TCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTG 156314 || |||| | | ||| | |||| ||||| | | |||| ||||||||||| ||| Sbjct 39601 TCTTCTTTTACAGTTAGCAAGAAGCAAGAACTCATCTAAGGTTTTGGTGTTCCAGAGTTA 39542 Query 156315 AATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 || || || || || |||||| |||| || | | ||| ||||||| ||||| Sbjct 39541 AACAGAGTTGGAGTGGCATGAGTAAACCACAGTTGACTCATCAAATCGTAAGTCTC 39486 >seq728 Length=45396 Score = 111 bits (122), Expect = 5e-19 Identities = 280/417 (67%), Gaps = 19/417 (5%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCT--TAAATCCAT 288946 ||||| |||||||||||||| || | ||||| || || || || | ||| |||| Sbjct 12578 ATATCTGCTCTGTTTGTTGCAGCTAGTACAATAACTGACTC--TTCAGTACCAAAACCAT 12635 Query 288947 CCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAAT 289006 |||| | | || |||||| || || | || | |||||| || ||| | |||| Sbjct 12636 CCATTTCTACCAGAAGTTGATTGAGAGTGTTATCACGTTCATCGTT---ACCAC-CGAAT 12691 Query 289007 CACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACG 289066 || || || |||| |||| ||||| ||||| || |||||||| | | | Sbjct 12692 TTACCTTGTCTCTTCTTT-----GCAACGGCATCGATTTCATCGATGAAAATAATTGAGG 12746 Query 289067 GAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACAT 289126 ||| |||| ||| || | |||| |||||||| | || ||||||| ||| || Sbjct 12747 GAGCCTTTTCTCTAGCTTTCTTGAATAGATCTCTTACTCTTGAAGCTCCAACACCGACGA 12806 Query 289127 ACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCT 289185 ||||||| || || || ||| | |||| | || | ||||| || ||||| ||||| Sbjct 12807 ACATTTCAACGAAGTCTGAACCTGATA-TGGACAAGAATGGCACTCCAGCTTCTCCTGCA 12865 Query 289186 ACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT 289245 |||||| | || || | || ||||| ||||| ||||| || |||| | | | || || Sbjct 12866 ACTGCCTTGGCAAGTAAAGTTTTACCAGTTCCTGGTGGGCCAACTAACAAAGCACCTCTT 12925 Query 289246 GGTACTTTTGCCCCAGCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAA 289300 || | || || ||| || || ||| |||| |||| ||| || || || |||| Sbjct 12926 GGAATTTGAGCTCCA--AGCTTTTGATACTTCTTAGGGTCCTTCAAGAAATCAACAA 12980 >seq979 Length=120341 Score = 104 bits (114), Expect = 7e-17 Identities = 258/387 (67%), Gaps = 6/387 (2%) Strand=Plus/Plus Query 302494 ATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTTAT-TTCTTACGGTC 302550 || || || || ||||| ||||| | ||| || | |||||| | | ||||||| || Sbjct 77721 ATACCATCCTCACCGTAAAGGAAT--TAAATAATCT-GTTCTTTTGAAGTTCTTACAGTT 77777 Query 302551 ATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCA 302610 |||||| | ||| | |||||| | | ||| || ||||| | ||||| |||||| Sbjct 77778 CCATCATACTTCACCATCACGTCTTCTAGAGCCTTAATCAAACGTCTTTGAATGTAACCA 77837 Query 302611 GTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 ||| | ||||| || ||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 77838 GTTTCTGCAGTTTTAACTGCTGTATCAATGAGACCCTCACGACCTCCCATAGCATGGAAG 77897 Query 302671 AATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 || | |||| || || || | | | | | || || ||||| || Sbjct 77898 AAGAATTCTTGAGGAGTTAATCCATTTAAATAACAATTTTCCACAAAACCTTTGCTTTCT 77957 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 || || ||| || | ||||| || || | || | | | ||| |||| ||| Sbjct 77958 GGACCATAGTCATCTTTTGAGAAGTGAGGTAGTGATCTTCTGTGGAAACCGAATGGAATA 78017 Query 302791 CGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCA 302850 || || || || || || || || |||| || | || || || ||||| ||||||| | Sbjct 78018 CGTTTACCTTCTACATTTTGTTGACCCACACAAGCCATAATTTGGGAAATGTTTAAATTA 78077 Query 302851 CTGCCCTTGGAGCCAGCATTTACCATA 302877 || || || ||||||| ||||||| Sbjct 78078 GAACCTTTAGAACCAGCATATACCATA 78104 >seq7850 Length=38322 Score = 95.1 bits (104), Expect = 4e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCA-CACACGGAGAATTTTGTCT 289079 || || || || || ||||| |||||||||||||| || | ||| || | ||| ||| Sbjct 721 CTCTTCTTCCCGACTGCATCTATTTCGTCAATGAAGATAATTACA-GGGGCCTTTGATCT 779 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || | ||| || |||||||| | || || |||| ||| || |||||||||| || Sbjct 780 GGCTTTCTTAAACAAATCTCTTACTCTTGAAGCGCCAACACCTACGAACATTTCTACGAA 839 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 || ||| |||| | | || ||| | || || ||||| || ||||||||| | || || Sbjct 840 GTCGGAACCGGAAATTGAAAAGAAGGGGACTTTGGCTTCACCGGCTACTGCCTTGGCAAG 899 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 | |||||||| || || ||||| |||| || Sbjct 900 CATGGTCTTACCGCAACCTGGGGGTCCTACTAAAAG 935 >seq1710 Length=75463 Score = 86.0 bits (94), Expect = 2e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || || || ||||| ||||| |||||||||||||| || | || | ||| ||| Sbjct 16375 CTCTTCTTTCCAACTGCATCTATTTCGTCAATGAAGATAATTGCAGGGGCCTTTGATCTG 16434 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | ||| | |||||||| | || || |||| ||| || |||| ||||| || Sbjct 16435 GCTTTCTTAAACAGATCTCTTACTCTTGAGGCGCCAACACCTACGAACATCTCTACGAAG 16494 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| |||| | | || ||| | || || ||||| || ||||||||| | || || Sbjct 16495 TCGGAACCGGAAATTGAAAAGAAGGGGACTTTGGCTTCACCAGCTACTGCCTTGGCGAGC 16554 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 | |||||||| || || ||||| |||| || Sbjct 16555 ATGGTCTTACCGCAACCTGGGGGTCCTACTAAAAG 16589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471332580907640