Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq17288 100 3e-15 >seq17288 Length=143976 Score = 100 bits (110), Expect = 3e-15 Identities = 202/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| || || |||||||| || || | | |||| |||||| Sbjct 116681 GAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGG 116622 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | || | ||| | ||| ||||||||| ||||| ||||| ||| |||||| Sbjct 116621 ATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAA 116562 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||||||||||||||| | ||||| |||| |||| | |||| | Sbjct 116561 AAGGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAATCCTTA 116502 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCG-AGGCCTCGGCCTTTTTGTA 869871 ||||| | |||||| | ||||| | |||||||| | || | || | | ||||| Sbjct 116501 ACGTCGGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTA 116443 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||||| ||| | | | ||| ||| || | || ||||| | ||| ||||| || Sbjct 116442 CATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTTATC 116386 Score = 86.0 bits (94), Expect = 8e-11 Identities = 172/254 (68%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||| || ||||||||||| |||||||| ||||| ||||| | |||||| || Sbjct 116930 AAGGTGAGACCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCT 116871 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| ||||||||||||| || || || | || || | ||| || ||| | | Sbjct 116870 GAGAAGAAGATGCCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCT-----AG 116816 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTG 869389 | || || |||||||| || ||||| || ||||| || | || || | | Sbjct 116815 CGCT-CTCACCAATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGATGTTA 116757 Query 869390 TCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGG 869449 |||||| |||||| ||||| ||| ||||| ||| ||||||||| || Sbjct 116756 GTGATGGCTTTGAAGAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGT 116697 Query 869450 AGCGAATAGGTCTC 869463 | || || ||||| Sbjct 116696 ACTGAGTAAGTCTC 116683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105028496353240