Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10467 122 8e-23 seq6376 122 8e-23 seq5238 122 8e-23 seq1293 122 8e-23 seq20086 120 3e-22 seq18779 111 1e-19 seq2143 107 2e-18 seq17194 96.9 3e-15 seq1748 84.2 2e-11 >seq10467 Length=17661 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| | || || | |||||||| |||||||| || || ||||| | | Sbjct 3611 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 3670 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||||||||| || || || |||||| Sbjct 3671 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 3730 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || || |||| || |||| | |||| ||||| ||| Sbjct 3731 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 3790 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 || ||||| ||||| || || |||||||| || Sbjct 3791 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 3822 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| | || || | |||||||| |||||||| || || ||||| | | Sbjct 14043 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 13984 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||||||||| || || || |||||| Sbjct 13983 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 13924 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || || |||| || |||| | |||| ||||| ||| Sbjct 13923 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 13864 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 || ||||| ||||| || || |||||||| || Sbjct 13863 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 13832 >seq6376 Length=13110 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| | || || | |||||||| |||||||| || || ||||| | | Sbjct 12009 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 12068 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||||||||| || || || |||||| Sbjct 12069 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 12128 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || || |||| || |||| | |||| ||||| ||| Sbjct 12129 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 12188 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 || ||||| ||||| || || |||||||| || Sbjct 12189 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 12220 >seq5238 Length=45295 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| | || || | |||||||| |||||||| || || ||||| | | Sbjct 21820 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 21879 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||||||||| || || || |||||| Sbjct 21880 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 21939 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || || |||| || |||| | |||| ||||| ||| Sbjct 21940 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 21999 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 || ||||| ||||| || || |||||||| || Sbjct 22000 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 22031 >seq1293 Length=7053 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| | || || | |||||||| |||||||| || || ||||| | | Sbjct 6298 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 6357 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||||||||| || || || |||||| Sbjct 6358 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 6417 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || || |||| || |||| | |||| ||||| ||| Sbjct 6418 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 6477 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 || ||||| ||||| || || |||||||| || Sbjct 6478 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 6509 >seq20086 Length=32257 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| | || || | |||||||| |||||||| || || ||||| | | Sbjct 21972 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 22031 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||||||||| || || || |||||| Sbjct 22032 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 22091 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || || |||| || |||| | |||| ||||| ||| Sbjct 22092 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 22151 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || |||||||| Sbjct 22152 ATCCAAAAAGAATCAACTCTCCACTTGGT 22180 >seq18779 Length=42783 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || ||||| || || |||| | Sbjct 13140 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGA-GCCATC 13198 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||| | ||||| ||||| || || |||||||| Sbjct 13199 AGACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCA 13258 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | ||||| || || || || || || || |||| | |||| || || || Sbjct 13259 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAA 13318 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| |||||||| || || || |||||||| Sbjct 13319 CATCCAAAAGGAGTCAACTCTCCACTTGGT 13348 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || || || || || || || || | || || || || | Sbjct 12456 ATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTCT 12515 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| |||||||| || ||||||||| Sbjct 12516 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 12575 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| || || || || || || || |||| | | || || ||| Sbjct 12576 CAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTACAAC 12635 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| || || |||||||| Sbjct 12636 ATCCAGAAGGAATCAACCCTTCACTTGGT 12664 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || || || || || |||| | Sbjct 12684 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGA-GCCATC 12742 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || ||||||||||| || ||||| || || |||||||| Sbjct 12743 AGACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 12802 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | || ||||| || || || || || ||| |||| | | || || || Sbjct 12803 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 12862 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||| || || || |||||||| | ||||| | || || Sbjct 12863 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 12910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || | || || || | | Sbjct 12912 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 12971 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||||||| ||||| || || ||||||||| Sbjct 12972 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 13031 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || ||||| || || || || || ||| |||| | | || || ||| Sbjct 13032 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 13091 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || |||||||| | ||||| | || || Sbjct 13092 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 13138 >seq2143 Length=26640 Score = 107 bits (118), Expect = 2e-18 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || ||||| || || |||| | Sbjct 6010 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCAC-CTCGATGTTGA-GCCATC 5953 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||| | ||||| ||||| || || |||||||| Sbjct 5952 AGACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCA 5893 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | ||||| || || || || || || || |||| | |||| || || || Sbjct 5892 ACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAA 5833 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| |||||||| || || || |||||||| Sbjct 5832 CATCCAAAAGGAGTCAACTCTCCACTTGGT 5803 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || || || || || || || || | || || || || | Sbjct 6725 ATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTCT 6666 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||||||||| |||||||| || ||||||||| Sbjct 6665 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 6606 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| || || || || || || || |||| | | || || ||| Sbjct 6605 CAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTACAAC 6546 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| || || |||||||| Sbjct 6545 ATCCAGAAGGAATCAACCCTTCACTTGGT 6517 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||| || ||||| || || |||||||||||| | | || ||||| || || Sbjct 6154 AAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTTTGCTGGAAAG 6095 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || ||| |||| | | || || ||||| |||||||| || || || ||| Sbjct 6094 CAACTTGAAGATGGAAGAACCCTTAGTGACTACAACATCCAAAAGGAGTCAACCCTTCAC 6035 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | ||||| | || || Sbjct 6034 TTGGTCCTCAGATTGAGAGGTGG 6012 >seq17194 Length=120762 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||| ||||| || ||||||||||| | | || || || || ||| Sbjct 44704 AAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGAGACTCATTTTCGCTGGAAAA 44645 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||| |||| || |||| | | || || || ||||| || ||||| || || || ||| Sbjct 44644 CAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTTCAC 44585 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||| || | | ||||| Sbjct 44584 TTGGTCTTGAGACTCAGAGGAGG 44562 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || || |||||||||||| | | ||||| ||||| ||| Sbjct 43967 AAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGACTCATCTTCGCCGGTAAA 43908 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || || |||| || || || ||||| |||||||| || || || ||| Sbjct 43907 CAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCAC 43848 Query 24908 TTGGT 24912 ||||| Sbjct 43847 TTGGT 43843 >seq1748 Length=94692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || |||| || || || |||||||| || || | | ||||||| || || | Sbjct 40271 AATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGACGATCTCAGT 40212 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 || | ||| || ||| || || || | ||||| | ||| ||||| || ||||| Sbjct 40211 GCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCTATTGCAAGC 40152 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 |||||||||||||||||| || || ||||| || ||| | |||||| || Sbjct 40151 ATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 40101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449752957921600