Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq10467 109 5e-19 seq6376 109 5e-19 seq5238 109 5e-19 seq1293 109 5e-19 seq20086 107 2e-18 seq18779 86.0 5e-12 seq2143 82.4 6e-11 >seq10467 Length=17661 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||| | || || ||||| ||||| ||||| || || ||||| | || |||||| Sbjct 3608 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 3667 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || |||||| ||||||||||| | ||| ||| Sbjct 3668 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 3727 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || || |||| || | |||||| || | |||||| Sbjct 3728 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 3787 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| ||||||||||| || | ||| |||| || Sbjct 3788 AACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 3822 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||| | || || ||||| ||||| ||||| || || ||||| | || |||||| Sbjct 14046 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 13987 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || |||||| ||||||||||| | ||| ||| Sbjct 13986 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 13927 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || || |||| || | |||||| || | |||||| Sbjct 13926 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 13867 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| ||||||||||| || | ||| |||| || Sbjct 13866 AACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 13832 >seq6376 Length=13110 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||| | || || ||||| ||||| ||||| || || ||||| | || |||||| Sbjct 12006 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 12065 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || |||||| ||||||||||| | ||| ||| Sbjct 12066 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 12125 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || || |||| || | |||||| || | |||||| Sbjct 12126 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 12185 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| ||||||||||| || | ||| |||| || Sbjct 12186 AACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 12220 >seq5238 Length=45295 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||| | || || ||||| ||||| ||||| || || ||||| | || |||||| Sbjct 21817 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 21876 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || |||||| ||||||||||| | ||| ||| Sbjct 21877 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 21936 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || || |||| || | |||||| || | |||||| Sbjct 21937 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 21996 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| ||||||||||| || | ||| |||| || Sbjct 21997 AACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 22031 >seq1293 Length=7053 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||| | || || ||||| ||||| ||||| || || ||||| | || |||||| Sbjct 6295 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 6354 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || |||||| ||||||||||| | ||| ||| Sbjct 6355 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 6414 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || || |||| || | |||||| || | |||||| Sbjct 6415 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 6474 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| ||||||||||| || | ||| |||| || Sbjct 6475 AACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 6509 >seq20086 Length=32257 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||| | || || ||||| ||||| ||||| || || ||||| | || |||||| Sbjct 21969 AAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCT 22028 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || |||||| ||||||||||| | ||| ||| Sbjct 22029 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGAT 22088 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| ||||| || | ||| || || || |||| || | |||||| || | |||||| Sbjct 22089 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTAC 22148 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||||||||| || | ||| |||| Sbjct 22149 AACATCCAAAAAGAATCAACTCTCCACTTGGT 22180 >seq18779 Length=42783 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | ||||| || ||||| ||| |||| ||||| Sbjct 13140 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 13199 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| ||||| ||||| | || |||||| Sbjct 13200 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 13259 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||||||||| | || ||||| || || || || | |||||| || | || |||||| Sbjct 13260 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 13319 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || || | ||| |||| | ||||| |||| || Sbjct 13320 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 13366 >seq2143 Length=26640 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | ||||| || ||||| ||| |||| ||||| Sbjct 6010 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACC-TCGATGTTGAGCCATCA 5952 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| ||||| ||||| | || |||||| Sbjct 5951 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 5892 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||||||||| | || ||||| || || || || | |||||| || | || |||||| Sbjct 5891 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 5832 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || || | ||| |||| | ||||| |||| || Sbjct 5831 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGG 5785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412712189639960