Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq17288 105 1e-16 seq2616 96.9 5e-14 seq22196 93.3 7e-13 seq19345 93.3 7e-13 seq3721 93.3 7e-13 >seq17288 Length=143976 Score = 105 bits (116), Expect = 1e-16 Identities = 160/221 (72%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 796185 GGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGAT 796244 ||| |||||||| ||||| ||||| ||| ||||||||||| |||||||||||||| Sbjct 116601 GGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGTGCTTGAT 116542 Query 796245 AAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGT---GTCGGCGCCGAGGTC 796301 |||||| | ||||| |||| |||| |||| | || | ||||| | ||||||| Sbjct 116541 AAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAAT---CCTTAACGTCGGTGGCGAGGTC 116485 Query 796302 GACCTCCTCGGCGGTCCA-AAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATAT-CCGT 796359 || ||||| | |||||| |||| || | || | | |||||||||| ||| || ||| Sbjct 116484 GATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATGTCGT 116426 Query 796360 TGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTC 796400 | ||| ||| || | | |||||| | || ||||| || Sbjct 116425 T-GTACTTGATTGGAAGGATAACAAATCTGTTTGGGTTATC 116386 >seq2616 Length=62126 Score = 96.9 bits (106), Expect = 5e-14 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 47185 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 47244 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||||||||| |||| ||| | || || |||| |||||| | Sbjct 47245 GGAGGAGTCTCACGGCGGTTTGGACCTCTCTGGATGAGAGAGTGTGCTTCTTGTTGTATC 47304 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| |||| |||| || || || || ||||||| Sbjct 47305 TAACAAGCTTTGAGGCCTCAAGAGCGATCTTCTCGAAGATATCACCGATGAAGGAGTTCA 47364 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 47365 TGATGTGCATAGATCTCTTGGAGATACCGGTCTCTGGGTGGACTTGCTTGAGGACTCTGT 47424 Query 1485710 A 1485710 | Sbjct 47425 A 47425 >seq22196 Length=5627 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 581 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 640 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||| |||| ||| | || | |||| |||||| | Sbjct 641 GGAGGAGTCTGACGGCGGTTTGGACCTCTCTGGATGAAAGAGTGTGCTTCTTGTTGTATC 700 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||||| | |||| |||| || || | || ||||||| Sbjct 701 TAACGAGCTTTGAGGCCTCGAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 760 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 761 TGATGTGCATGGATCTCTTGGAGATACCGGTCTCTGGGTGGACTTGCTTGAGGACTCTGT 820 Query 1485710 A 1485710 | Sbjct 821 A 821 >seq19345 Length=9912 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 2406 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 2465 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||| |||| ||| | || | |||| |||||| | Sbjct 2466 GGAGGAGTCTGACGGCGGTTTGGACCTCTCTGGATGAAAGAGTGTGCTTCTTGTTGTATC 2525 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||||| | |||| |||| || || | || ||||||| Sbjct 2526 TAACGAGCTTTGAGGCCTCGAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 2585 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 2586 TGATGTGCATGGATCTCTTGGAGATACCGGTCTCTGGGTGGACTTGCTTGAGGACTCTGT 2645 Query 1485710 A 1485710 | Sbjct 2646 A 2646 >seq3721 Length=53783 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| || | | Sbjct 16451 TGTACTTGGTGACGGCCTTGGTACCTTCTGAGACGGCGTGCTTGGCGAGTTCACCTGGGA 16392 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||||| |||| ||| | || | |||| |||||| | Sbjct 16391 GGAGGAGTCTGACGGCGGTTTGGACCTCTCTGGATGAAAGAGTGTGCTTCTTGTTGTATC 16332 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || ||||||| | |||| |||| || || | || ||||||| Sbjct 16331 TAACGAGCTTTGAGGCCTCGAGGGCGATCTTCTCGAAGATATCACCAATGAAGGAGTTCA 16272 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| ||| | |||||||| || || ||||| || |||||||| || ||| Sbjct 16271 TGATGTGCATGGATCTCTTGGAGATACCGGTCTCTGGGTGGACTTGCTTGAGGACTCTGT 16212 Query 1485710 A 1485710 | Sbjct 16211 A 16211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913510446291080