Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18779 113 3e-20 seq2143 100 2e-16 >seq18779 Length=42783 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| || ||||||| ||||| ||| |||||| || ||||| ||||| Sbjct 12910 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 12851 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | |||| || ||||||||||| || || || |||| ||| || || | || Sbjct 12850 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGA 12791 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || |||||| | | || | || | ||| ||| Sbjct 12790 ATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACA 12731 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || ||||||||||| ||||||||||| || ||||| ||||| Sbjct 12730 TCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 12684 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| || ||||||| ||||| ||| |||||| || ||||| ||||| Sbjct 13138 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 13079 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | |||| || ||||||||||| || || || |||| ||| || || | || Sbjct 13078 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGG 13019 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || ||| ||||| || || || | || | ||||| Sbjct 13018 ATACCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTATCTGAAGGCTCGA 12961 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||||||||| || |||||||| || ||||| ||||| Sbjct 12960 CGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || | || || |||| ||||| ||| |||||||| ||||| ||||| Sbjct 12682 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 12623 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | | || || |||||||| || |||||||| |||| ||| || || | || Sbjct 12622 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 12563 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||||| | | || | ||| || ||| || Sbjct 12562 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 12503 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| || ||||||||||| || ||||| |||||| Sbjct 12502 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATG 12455 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||| | || |||||| || ||||| ||||| || | | | | | Sbjct 13354 CTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCG 13295 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || |||||||| || |||||||| |||| ||| || || | || | || |||||| Sbjct 13294 TCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTG 13235 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || ||| | | || | || | ||| ||||| | ||| ||| Sbjct 13234 TCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGTGATG 13175 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || |||||||| || ||||| ||||| Sbjct 13174 GTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 13140 >seq2143 Length=26640 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || | || || |||| ||||| ||| |||||||| ||||| ||||| Sbjct 6499 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTA 6558 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | | || || |||||||| || |||||||| |||| ||| || || | || Sbjct 6559 AGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 6618 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||||| | | || | ||| || ||| || Sbjct 6619 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 6678 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| || ||||||||||| || ||||| |||||| Sbjct 6679 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATG 6726 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||| | || |||||| || ||||| ||||| || | | | | | Sbjct 5797 CTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCG 5856 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || |||||||| || |||||||| |||| ||| || || | || | || |||||| Sbjct 5857 TCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTG 5916 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || ||| | | || | || | ||| ||||| | ||| ||| Sbjct 5917 TCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGA-GGTGATG 5975 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || |||||||| || ||||| ||||| Sbjct 5976 GTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 6010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325590707520680