Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq18779 118 2e-21 seq10467 111 2e-19 seq6376 111 2e-19 seq5238 111 2e-19 seq1293 111 2e-19 seq20086 109 9e-19 seq17194 93.3 7e-14 seq2143 87.8 3e-12 >seq18779 Length=42783 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || ||||| || || ||| ||||||| || | || | Sbjct 12685 TGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA- 12743 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| |||| || || || || ||| ||| ||||| ||||| ||||||||| Sbjct 12744 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 12803 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||||||||||||||| || || ||| | || ||| ||||| | | || || || Sbjct 12804 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 12863 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| || || || | || || || | |||| ||||| |||| Sbjct 12864 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTA 12912 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || || || | || || || | | | Sbjct 12913 TGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCAG 12972 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| || ||||| || ||||||||||||| Sbjct 12973 ATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAAC 13032 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||||||||||||||| || || ||| | || ||| ||||| | | || || || | Sbjct 13033 AAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAACA 13092 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || || || | || || || | |||| ||||| |||| Sbjct 13093 TCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTA 13140 Score = 86.0 bits (94), Expect = 1e-11 Identities = 166/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || | || ||||| || || || | ||||| || | || | Sbjct 13141 TGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA- 13199 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| |||| || || || || | || ||||| || |||||||||||| Sbjct 13200 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 13259 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||| || || || ||||| ||| | || || ||||| || | || || || Sbjct 13260 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 13319 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTG 146270 || ||||| || || ||| |||| || || | || | ||||| ||| || ||| ||| Sbjct 13320 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGGTTGATGAAT-TTG 13378 Query 146271 A 146271 | Sbjct 13379 A 13379 >seq10467 Length=17661 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || || || || || || |||||| |||||||||| | | ||||| Sbjct 3617 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 3676 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || |||| || || || || ||| |||||||| ||||| || |||||||| ||| Sbjct 3677 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 3736 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| ||||| || || | || || || ||||| || | ||||| || || ||| Sbjct 3737 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAA 3796 Query 146217 AAAGAATCGACTATCCATTTAGTATT 146242 |||||||| ||| |||| || || || Sbjct 3797 AAAGAATCAACTCTCCACTTGGTCTT 3822 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || || || || || || |||||| |||||||||| | | ||||| Sbjct 14037 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 13978 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || |||| || || || || ||| |||||||| ||||| || |||||||| ||| Sbjct 13977 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 13918 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| ||||| || || | || || || ||||| || | ||||| || || ||| Sbjct 13917 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAA 13858 Query 146217 AAAGAATCGACTATCCATTTAGTATT 146242 |||||||| ||| |||| || || || Sbjct 13857 AAAGAATCAACTCTCCACTTGGTCTT 13832 >seq6376 Length=13110 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || || || || || || |||||| |||||||||| | | ||||| Sbjct 12015 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 12074 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || |||| || || || || ||| |||||||| ||||| || |||||||| ||| Sbjct 12075 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 12134 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| ||||| || || | || || || ||||| || | ||||| || || ||| Sbjct 12135 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAA 12194 Query 146217 AAAGAATCGACTATCCATTTAGTATT 146242 |||||||| ||| |||| || || || Sbjct 12195 AAAGAATCAACTCTCCACTTGGTCTT 12220 >seq5238 Length=45295 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || || || || || || |||||| |||||||||| | | ||||| Sbjct 21826 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 21885 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || |||| || || || || ||| |||||||| ||||| || |||||||| ||| Sbjct 21886 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 21945 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| ||||| || || | || || || ||||| || | ||||| || || ||| Sbjct 21946 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAA 22005 Query 146217 AAAGAATCGACTATCCATTTAGTATT 146242 |||||||| ||| |||| || || || Sbjct 22006 AAAGAATCAACTCTCCACTTGGTCTT 22031 >seq1293 Length=7053 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || || || || || || |||||| |||||||||| | | ||||| Sbjct 6304 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 6363 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || |||| || || || || ||| |||||||| ||||| || |||||||| ||| Sbjct 6364 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 6423 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| ||||| || || | || || || ||||| || | ||||| || || ||| Sbjct 6424 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAA 6483 Query 146217 AAAGAATCGACTATCCATTTAGTATT 146242 |||||||| ||| |||| || || || Sbjct 6484 AAAGAATCAACTCTCCACTTGGTCTT 6509 >seq20086 Length=32257 Score = 109 bits (120), Expect = 9e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 || ||| | || || || || || || || |||||| |||||||||| | | ||||| Sbjct 21978 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 22037 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || |||| || || || || ||| |||||||| ||||| || |||||||| ||| Sbjct 22038 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 22097 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| ||||| || || | || || || ||||| || | ||||| || || ||| Sbjct 22098 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAA 22157 Query 146217 AAAGAATCGACTATCCATTTAGT 146239 |||||||| ||| |||| || || Sbjct 22158 AAAGAATCAACTCTCCACTTGGT 22180 >seq17194 Length=120762 Score = 93.3 bits (102), Expect = 7e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||| |||||||||||||||||||||||||| || || ||||||||| | || || Sbjct 43955 AAGGAAGGTATTCCACCCGATCAACAAAGACTCATCTTCGCCGGTAAACAACTTGAAGAC 43896 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 ||||| || | || || || || ||||| || || ||| |||| || || | || Sbjct 43895 GGCAGAACTTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTCCTCAGA 43836 Query 146247 TTAAGAGGAGGTAAATAAA 146265 | ||||| ||| ||| || Sbjct 43835 CTTAGAGGTGGTCAATGAA 43817 >seq2143 Length=26640 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 146095 CTATTCAAAATGTAAAAAAT--AAAATACAACTTAAAGAAGGCATTCCACCCGATCAACA 146152 ||||| |||| || | || || || ||| ||| ||||| ||||| ||||||||||| Sbjct 6176 CTATTGAAAACGTCACAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAACA 6117 Query 146153 AAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATAT 146212 ||||||||||||||| || || ||| | || ||| ||||| | | || || || || Sbjct 6116 AAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAACAT 6057 Query 146213 ACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 ||||| || || || | || || || | |||| ||||| |||| Sbjct 6056 CCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTA 6010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785913647502400