Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq20086 116 3e-21 seq10467 116 3e-21 seq6376 116 3e-21 seq5238 116 3e-21 seq1293 116 3e-21 >seq20086 Length=32257 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || || ||||||||||| ||||| ||||| | | ||| | || || Sbjct 22180 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 22121 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | | || |||||| | || | ||| || ||||| || |||||||| ||||||||||| Sbjct 22120 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG- 22062 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | || || |||| | || |||||| | ||||| |||||||| ||||| || Sbjct 22061 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 22002 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || |||| |||||| Sbjct 22001 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 21969 >seq10467 Length=17661 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || || ||||||||||| ||||| ||||| | | ||| | || || Sbjct 3819 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 3760 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | | || |||||| | || | ||| || ||||| || |||||||| ||||||||||| Sbjct 3759 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG- 3701 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | || || |||| | || |||||| | ||||| |||||||| ||||| || Sbjct 3700 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 3641 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || |||| |||||| Sbjct 3640 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 3608 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || || ||||||||||| ||||| ||||| | | ||| | || || Sbjct 13835 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 13894 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | | || |||||| | || | ||| || ||||| || |||||||| ||||||||||| Sbjct 13895 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG- 13953 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | || || |||| | || |||||| | ||||| |||||||| ||||| || Sbjct 13954 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 14013 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || |||| |||||| Sbjct 14014 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 14046 >seq6376 Length=13110 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || || ||||||||||| ||||| ||||| | | ||| | || || Sbjct 12217 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 12158 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | | || |||||| | || | ||| || ||||| || |||||||| ||||||||||| Sbjct 12157 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG- 12099 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | || || |||| | || |||||| | ||||| |||||||| ||||| || Sbjct 12098 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 12039 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || |||| |||||| Sbjct 12038 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 12006 >seq5238 Length=45295 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || || ||||||||||| ||||| ||||| | | ||| | || || Sbjct 22028 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 21969 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | | || |||||| | || | ||| || ||||| || |||||||| ||||||||||| Sbjct 21968 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG- 21910 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | || || |||| | || |||||| | ||||| |||||||| ||||| || Sbjct 21909 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 21850 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || |||| |||||| Sbjct 21849 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 21817 >seq1293 Length=7053 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || || ||||||||||| ||||| ||||| | | ||| | || || Sbjct 6506 ACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCC 6447 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | | || |||||| | || | ||| || ||||| || |||||||| ||||||||||| Sbjct 6446 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG- 6388 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | || || |||| | || |||||| | ||||| |||||||| ||||| || Sbjct 6387 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 6328 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || || |||| |||||| Sbjct 6327 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 6295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385098448226520