Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq18636 84.2 3e-11 seq3905 84.2 3e-11 seq1144 84.2 3e-11 >seq18636 Length=38828 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 114683 TCCACAGAGATTCGAACTCTGACTGAAGGATTAAAAGTCCCATATGCTACCATTACATCA 114742 |||||||||||||||||||||||| ||||||| | |||||||| ||||||| ||||| || Sbjct 10802 TCCACAGAGATTCGAACTCTGACTAAAGGATTTAGAGTCCCATGTGCTACCCTTACACCA 10743 Query 114743 TAGA 114746 | || Sbjct 10742 TGGA 10739 >seq3905 Length=23678 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 114683 TCCACAGAGATTCGAACTCTGACTGAAGGATTAAAAGTCCCATATGCTACCATTACATCA 114742 |||||||||||||||||||||||| ||||||| | |||||||| ||||||| ||||| || Sbjct 23192 TCCACAGAGATTCGAACTCTGACTAAAGGATTTAGAGTCCCATGTGCTACCCTTACACCA 23133 Query 114743 TAGA 114746 | || Sbjct 23132 TGGA 23129 >seq1144 Length=18631 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 114683 TCCACAGAGATTCGAACTCTGACTGAAGGATTAAAAGTCCCATATGCTACCATTACATCA 114742 |||||||||||||||||||||||| ||||||| | |||||||| ||||||| ||||| || Sbjct 10574 TCCACAGAGATTCGAACTCTGACTAAAGGATTTAGAGTCCCATGTGCTACCCTTACACCA 10515 Query 114743 TAGA 114746 | || Sbjct 10514 TGGA 10511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 789902764588800