Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq7609 84.2 3e-11 seq234 82.4 1e-10 >seq7609 Length=11403 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 193450 AAATAGGGGATAAATTTTGTTCA-GGAATGGCCCAAAAAGGAACTTGTGGTATGATTTAT 193508 |||| |||||||||||| ||| | |||| |||||||| || | ||||||| |||| Sbjct 3185 AAATTGGGGATAAATTTGCCTCACGTCATGG-TCAAAAAGGTACCCGCGGTATGACTTAT 3243 Query 193509 TCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCA 193568 |||||||||| | |||||||| |||| | || ||| |||| ||| ||||||| Sbjct 3244 AGACAAGAAGATCTACCATTTACTAGAGAAGGTGTAGTCCCAAATATGATTGTTAATCCT 3303 Query 193569 AATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 || ||| || || | |||||| ||| ||| | |||| Sbjct 3304 CATGCTATCCCTTCAAAAATGACAATTGGTCATTTGATTG 3343 >seq234 Length=113606 Score = 82.4 bits (90), Expect = 1e-10 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 193483 AAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTA 193542 ||||||| ||||||||||||| |||| |||||| ||| | ||||| || |||| Sbjct 55206 AAAAAGGTACTTGTGGTATGACTTATAGACAAGAGGATCTACCATTCACTAGAGAAGGTG 55147 Query 193543 TGGTACCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 | || |||||||| ||| ||||||| || ||| || || |||||||| ||| Sbjct 55146 TAGTTCCAGATATGATTGTTAATCCTCATGCTATCCCTTCAAGAATGACAATT 55094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634973390401600