Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq234 87.8 2e-12 seq7609 84.2 3e-11 >seq234 Length=113606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 193036 AAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTA 193095 ||||||| ||||||||||||| |||| |||||| ||| | ||||| || | |||| Sbjct 55206 AAAAAGGTACTTGTGGTATGACTTATAGACAAGAGGATCTACCATTCACTAGAGAAGGTG 55147 Query 193096 TGGTACCAGATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 | || |||||||| ||| ||||||| || ||| || || |||||||| ||| Sbjct 55146 TAGTTCCAGATATGATTGTTAATCCTCATGCTATCCCTTCAAGAATGACAATT 55094 >seq7609 Length=11403 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 193003 AAATAGGGGATAAATTTTGTTC-GGGAATGGCCCAAAAAGGAACTTGTGGTATGATTTAT 193061 |||| |||||||||||| || | |||| |||||||| || | ||||||| |||| Sbjct 3185 AAATTGGGGATAAATTTGCCTCACGTCATGG-TCAAAAAGGTACCCGCGGTATGACTTAT 3243 Query 193062 TCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAATCCA 193121 |||||||||| | |||||||| | |||| | || ||| |||| ||| ||||||| Sbjct 3244 AGACAAGAAGATCTACCATTTACTAGAGAAGGTGTAGTCCCAAATATGATTGTTAATCCT 3303 Query 193122 AATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 || ||| || || | |||||| ||| ||| | |||| Sbjct 3304 CATGCTATCCCTTCAAAAATGACAATTGGTCATTTGATTG 3343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628329127219200