Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq19259 253 2e-61 seq259 129 4e-24 seq1609 113 3e-19 seq4 105 5e-17 seq5958 98.7 7e-15 seq4749 98.7 7e-15 >seq19259 Length=46844 Score = 253 bits (280), Expect = 2e-61 Identities = 943/1459 (65%), Gaps = 37/1459 (3%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | ||| || |||||||| ||||| ||||| ||||| |||| ||| Sbjct 32639 ATTCCGTTGGCATCAATATCGAAAGTGACTTCGATTTGTGGGACACCTCTGGGAGCGGGT 32580 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| ||||| | || ||| | || || | ||||| || || | | || |||| Sbjct 32579 GGGATACCTTCAAGGTTGAATTTACCGAGTAAGTGGTTATCCTTGGTCATTGATCTTTCA 32520 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||||| | ||| || || | | ||| || || | ||| || || || | | Sbjct 32519 CCTTCGAAGACTTGAATCAAGACACCTGGTTGGTTGTCAGCATAGGTGGTGAAGATTTGT 32460 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || || || |||||||| ||| | | ||||| | ||| ||||| Sbjct 32459 GACTTCTTGGTTGGGATGGTAGTGTTTCTTGGAATGAGAACAGTCATGACACCTCCAGCA 32400 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT-TTGAAGTTTTTC 281739 ||||| | ||| || || || || ||||| | |||| | || |||| ||| | Sbjct 32399 GTTTCAATACCGGTTGAGAGTGGGGTAACATCCAAAAGGAGGAGATCCTTGACGTTGCTG 32340 Query 281740 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 || || ||| |||||||| ||||| | |||||||| || |||||||||||||| Sbjct 32339 -TCTCCTTCTCCAGTGAGAATAGCAGCTTGGACGGCAGCACCGTAAGCAACAGCTTCATC 32281 Query 281800 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC 281859 || || | | | || || | || || ||||| || | || || | |||| || Sbjct 32280 TGGGTTGATTGATCTGTTAAGGGTCTTTCCGTTGAAGAAGTCGGAGAGCATTTGTTGAAC 32221 Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 ||| || || | | ||| || ||||| || |||| ||| || | ||| || | || Sbjct 32220 CTTGGGGATTCTGGTTGAACCACCAACCAAGACAACTTCGTGGATTTGTCCCTTGGCGAG 32161 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACA 281979 ||| ||| | || ||||| |||||| | || ||| || | || ||| Sbjct 32160 GCCTGAGTCCTTAAGGACGTTTTCTACGGGTGGCATACATTTTCTGAAGAGATCCATACA 32101 Query 281980 AAGTTCTTCGAATTTAGCTCTAG---TAAGAGTGACATTATAATCAATTCCTTCGAACAA 282036 ||||| ||||| |||||||| | | ||||| || | || || || | ||| Sbjct 32100 GAGTTCCTCGAACTTAGCTCTTGAGATTTGAGTG---TTGAAGTCTTCACCCTC-AGCAA 32045 Query 282037 -AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 282095 || || |||||| | | |||| | || || || | || || || | Sbjct 32044 GAGTTTCGCATTCAATTGGGGCTTGATGGGCAGCTGAAAGAATTCTCTTTGCCTTCTCGC 31985 Query 282096 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC----TGATTGAT-TCAA-ATCTGTTTTAT 282149 || || || ||||||| | ||| | || ||||| |||| | | || || | Sbjct 31984 ATTGAGTTCTGAGTCTTCTGAGTGCTCTGGCGTTTCCGTTGATGTCAATACCAGTCTTCT 31925 Query 282150 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 282209 ||||||| || |||| || | ||||| | || || ||||||||||||| Sbjct 31924 ------TCTTGAATTCAGCAACGCAATAGTCGACAAGTCTGTTGTCGAAATCTTCACCTC 31871 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 |||| | || | || || || | |||| ||| | || ||||||| | | | Sbjct 31870 CCAAATGGGTGTGACCGTTGGTGGCCTTAACTTCGAAGATACCTTCTTCAATGGTGAGGA 31811 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT-TTGTCT 282328 | | ||||| || |||||||| | ||| || || || || || ||||| ||| Sbjct 31810 GGGAGACATCGAAAGTACCACCACCGAGATCGAAGATGAGAACGTT--TTTCTCTTGGGA 31753 Query 282329 TGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387 || ||| || || | ||| || |||| ||| ||||||||||| || || || ||||| | Sbjct 31752 TGATTTCTTGTCCAAACCGTAAGCAATAGCGGCAGCAGTTGGCTCGTTGATGATTCTGAG 31693 Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447 ||| || | ||| | || | || ||||| || ||||||||||| ||||| ||||| || Sbjct 31692 AACGTTCATACCTGAGATGGTACCAGCATCCTTGGTGGCTTGTCTCTGTGAGTCGTTGAA 31633 Query 282448 ATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGT 282507 ||| || || ||||| ||||| || | | || ||| || |||||| || | Sbjct 31632 ATAAGCTGGGACAGTGATAACAGCGTTCTTGACAGTCTTTGAAAGATAAGCTTCAGCGAT 31573 Query 282508 TTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG-GAGAATATTGCTTGGATT 282566 || ||||| || | || | ||| ||||| |||| ||| | | | | | | ||||| || Sbjct 31572 TTCCTTCATCTTGATCAAGACCATAGATGAGATTTCTTCAGCGTGGA-ACTTCTTGGCTT 31514 Query 282567 CATTTTGATATGATACTTCAAAATATGGTTTATTACC--AACATTAAT-AACTTTAAATG 282623 || | || || ||| ||| || | | | | || | || || |||| Sbjct 31513 CACCCTTGTAGTCGACAACAATGACTGGCTTGTCAGCTGGTCCTTGCTCGACCTTGAATG 31454 Query 282624 GCCAATATTTCATATCTGATTGAACACTTTG---GTCATTAAAATCTCTACCAATTAATC 282680 |||||| ||||| || ||||| |||| ||| || | ||| || || | || Sbjct 31453 GCCAATGCTTCATGTCGTCTTGAA---TTTGCTTCTCAGAGAATTTTCTTCCGATAAGTC 31397 Query 282681 GTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTC 282740 || || || || | || || | || || ||| |||||| ||||||| |||| Sbjct 31396 TCTTGGCGTCGAAGACGGTGTTCTTGGGGTTTCTAGCAACTTGATTCTTGGCTGAGTCTC 31337 Query 282741 CAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 282800 |||| || ||| || || || | || ||||||||||| ||| || ||||||| Sbjct 31336 CAATAAGTCTCTCTTCTTCAGTGAAAGCGACGTATGATGGAGTGGTGTTGTTTCCTTGAT 31277 Query 282801 CATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTC 282860 | || | || ||||||||||| | || |||| |||||||| ||| |||| || | Sbjct 31276 CGTTGGGGATGATTTCAACTTTGTCGTTGAGCCACACACCTACGCAAGAGTAAGTGGTGC 31217 Query 282861 CTAAATCAATACCAATAGC 282879 | | ||| || |||||||| Sbjct 31216 CGAGATCTATTCCAATAGC 31198 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 |||||||| |||| ||| || |||||||| || || || ||| | ||||| | | ||| Sbjct 31739 AAACCGTAAGCAATAGCGGCAGCAGTTGGCTCGTTGATGATTCTGAGAACGTTCATACCT 31680 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 | || || ||| ||| || ||||||||||||| ||| || ||||| ||||| ||| Sbjct 31679 GAGATGGTACCAGCATCCTTGGTGGCTTGTCTCTGTGAGTCGTTGAAATAAGCTGGGACA 31620 Query 86236 GTAATAACTGCTTTATTAATAGGTTTTTGTAA 86267 || ||||| || || || | | || |||| || Sbjct 31619 GTGATAACAGCGTTCTTGACA-GTCTTTGAAA 31589 >seq259 Length=203576 Score = 129 bits (142), Expect = 4e-24 Identities = 215/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 400303 CTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATT 400362 || ||||| || || |||||||| || ||| | | || ||| ||| || | ||| || Sbjct 72166 CTTATTTTAACTGAAGGAGATTCTGCAAAATCTCTAGCAATGAGTGGTCTGTAAGTTGTT 72225 Query 400363 GGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCT 400422 || |||||| || ||||||||||||||| ||||||||| | || ||||| || ||| Sbjct 72226 GGCAGAGATCGTTTTGGAGTTTTCCCACTAAGAGGAAAATTATTAAATGTAAGAGATTGC 72285 Query 400423 AGTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTT 400482 || || ||||| ||||| ||||| || | || | || || | || || Sbjct 72286 GGTATGAAGTAAATTTTAGATAACGAGGAGATCCAAAATATTATCAAGATACTCGGGCTA 72345 Query 400483 GAACAAGGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTT 400542 | || | | ||||||||||| || || |||||||| ||| |||||| | Sbjct 72346 TATATGGGTAGATAATATGATGATCTTAAGACATTGCGATATGGATCTATAATGATTATG 72405 Query 400543 GCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGT 400602 || ||| ||||| |||||| | |||||||| ||| | ||||| || ||||| ||| Sbjct 72406 GCAGATTAAGATCATGATGGATCTCATATCAAGGGACTTATCATAAACTTTATACATAAC 72465 Query 400603 TTTTGGCCATC 400613 || |||||||| Sbjct 72466 TTCTGGCCATC 72476 >seq1609 Length=68617 Score = 113 bits (124), Expect = 3e-19 Identities = 192/273 (70%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 435006 TGTAGAAGGAAAAAGAATTCAAATCAGATTCAATGGTAGAACACTTCCAATGTTCCCTAA 435065 ||| ||||| |||||| ||||| | | || || |||||| | || ||||| || Sbjct 21507 TGTTGAAGGTAAAAGAGTTCAATTTGGCTTTAAATCTAGAACTTTACCTCACTTCCCAAA 21566 Query 435066 ATTTGATGATAGTGCATTCTCCAGAGGTTTTTGTCGTAATTCCTT-TATCGAGGGTCTTG 435124 |||| || || || || | ||||||| ||| | | | || |||| || | || Sbjct 21567 GCATGATTATGGTCCAGCTTCTAAAGGTTTT-GTCATTAATAATTATATC-AGTGGGTTA 21624 Query 435125 GA-CCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCT 435183 || ||| ||||| |||||||| | |||| || ||||||||| ||||| ||||||| Sbjct 21625 GATCCTCCAGAATTCTTCTTCCATGCTATGGGAGGACGTGAAGGTCTTATTGATACAGCA 21684 Query 435184 ATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATT 435243 | |||||| | || || || ||||||||||||| ||| || || || |||||||| Sbjct 21685 GTCAAAACTTCGGAAACAGGATATATTCAAAGAAGACTCGTAAAAGCACTGGAAGATATC 21744 Query 435244 AAACAAGAATATGATGGTACAGTGAGAAATGCA 435276 | | ||||||| ||||| ||||| ||| || Sbjct 21745 ATGGTAAAATATGACGGTACTGTGAGGAATTCA 21777 >seq4 Length=44049 Score = 105 bits (116), Expect = 5e-17 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||||| || ||||||||||||| || | ||| || |||||||||||||||| || ||| Sbjct 4965 TCTTGCTTACTATCAAGACCATAAGCTATAGCTGCGGCAGTTGGTTCATTAAGAAGTCTT 4906 Query 282386 AAAACATTAAGACCAGC-AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 282444 |||||||| | || || || || |||||| ||| || || | |||| ||||| Sbjct 4905 AAAACATTTAACCCCGCTAACTC-AGCTGCATGTTTGGTCGCAATCCGCTGTGCATCGTC 4847 Query 282445 AAAATATGCAGGAACAGTAATAACGGC 282471 |||||| |||||||| |||||||| || Sbjct 4846 AAAATAGGCAGGAACGGTAATAACCGC 4820 >seq5958 Length=11399 Score = 98.7 bits (108), Expect = 7e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||||||||| | || | || ||||||||||| || || || |||||| ||| | | Sbjct 2358 TTATCAAGACCGAAGGCGAGTGCGGCAGCAGTTGGCTCGTTGATGATTCTCTTAACTTCA 2417 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||| || ||| | || ||||| || || |||||||| || || || || ||||| || Sbjct 2418 AGATTTGCGATTTTACCAGCATCCTTGGTAGCTTGTCTCTGAGAGTCATTGAAATAAGCT 2477 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 |||||||||| ||| || || | | | ||| || | |||||| Sbjct 2478 GGAACAGTAACAACAGCCTCCTTGATTGATTTACCTAGATAAGC 2521 >seq4749 Length=38707 Score = 98.7 bits (108), Expect = 7e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||||||||| | || | || ||||||||||| || || || |||||| ||| | | Sbjct 21338 TTATCAAGACCGAAGGCGAGTGCGGCAGCAGTTGGCTCGTTGATGATTCTCTTAACTTCA 21279 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||| || ||| | || ||||| || || |||||||| || || || || ||||| || Sbjct 21278 AGATTTGCGATTTTACCAGCATCCTTGGTAGCTTGTCTCTGAGAGTCATTGAAATAAGCT 21219 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 |||||||||| ||| || || | | | ||| || | |||||| Sbjct 21218 GGAACAGTAACAACAGCCTCCTTGATTGATTTACCTAGATAAGC 21175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739367656692720